CF504218

Overview
NameCF504218
Unique NameCF504218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.184e-12
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR ITIFSP+GRL+QVEYA +AVK  G  SIGVR  + V +V  K+    LL+ +SV  L  I  ++G  + G  AD
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVK-RGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVAD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.184e-12
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  SV  +  +  ++ L   G+ AD
Sbjct:    4 YDRAITVFSPDGHLFQVEYAMEAVR-KGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSVRKIVNLDDHIALACAGLKAD 80          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.184e-12
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AVK  G T++G+RGKD V +  +KK   KL +  +V  +  + +++ +   G+TAD
Sbjct:    5 YDRAITVFSPDGHLFQVEYAQEAVK-KGSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKICALDEHVCMAFAGLTAD 81          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.771e-12
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR ITIFSP+G L+QV+YAF+AVK  G T++GV+ K  V ++ +K+   +LLD  S+  +F +  ++G    G+ +D
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVK-KGWTTLGVKTKAGVVLIGEKRKATQLLDVDSIEKVFILDDHVGCSFAGLASD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.771e-12
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GYDR IT+FSP+GRLFQV YA +AVK  G T++GV+  + V +  +K++  +L++  S   +F I  ++   ++G+ AD
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVK-RGATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIAD 86          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.771e-12
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AVK  G T++GVRGKD V +  +KK   KL D  +V  +  +   + +   G+TAD
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVK-KGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTAD 79          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.771e-12
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AVK  G T++GVRGKD V +  +KK   KL D  +V  +  +   + +   G+TAD
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVK-KGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTAD 79          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.771e-12
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AVK  G T++GVRGKD V +  +KK   KL D  +V  +  +   + +   G+TAD
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVK-KGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTAD 79          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.771e-12
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR ++ FSPEGRLFQVEY+ +A+K  G T+IG+  K+ V +  +K+    LL+  S+  +  I +++G   +G+TAD
Sbjct:    8 YDRGVSTFSPEGRLFQVEYSLEAIK-LGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.771e-12
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 3
Query:   99 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            GY   +T FSP G+L Q+EYA  AV AAG  S+G++  + V + T+KK    L D  SV  + PITK++G++ +GM  D
Sbjct:    5 GYSFSLTTFSPSGKLVQIEYALAAV-AAGAPSVGIKASNGVVLATEKKQKSILYDEQSVHKIEPITKHIGMVYSGMGPD 82          
The following BLAST results are available for this feature:
BLAST of CF504218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSMA_HALS35.184e-1250.00Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSA7_SOLLC5.184e-1246.15Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSA7_CARAU5.184e-1246.15Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSMA_SULTO6.771e-1244.30Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSMA_PYRFU6.771e-1241.77Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSA7_MOUSE6.771e-1248.72Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSA7_CHICK6.771e-1248.72Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA7_BOVIN6.771e-1248.72Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA5_YEAST6.771e-1242.31Proteasome component PUP2 OS=Saccharomyces cerevis... [more]
PSA2_CARAU6.771e-1244.30Proteasome subunit alpha type-2 OS=Carassius aurat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-707 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504218 ID=CF504218; Name=CF504218; organism=Citrus sinensis; type=EST; length=336bp
TGCGGATTGATCCGACAAGTAGAACTGCGTGAAGAAGAAAATTGAAAGAG
AGGAATCACTGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGG
ATACGATCGTCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAG
TCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATTGGT
GTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGA
CAAGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGT
ACCTTGGATTGCTGGCAACTGGAATGACAGCTGATG
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