CF504218

Overview
NameCF504218
Unique NameCF504218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9226 contig Csv1_Contig9226:54..389. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.843e-12
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  SV  +  +  ++ L   G+ AD
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGTDNVVLGVEKKSTAKLQDTRSVRKIVNLDDHIALACAGLKAD 80          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.843e-12
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR ITIFSP+G LFQVEYA +AVK  G T++GVRGKD + +  +KK    L D  ++  +  I  ++ L   G++AD
Sbjct:    4 YDRAITIFSPDGHLFQVEYAQEAVK-KGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSAD 80          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AVK  G T++GVRGK+ V +  +KK   KL D  +V  +  + + + +   G+TAD
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVK-KGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTAD 79          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AVK  G T++GVRGK+ V +  +KK   KL D  +V  +  + + + +   G+TAD
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVK-KGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTAD 79          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  S+  +  +  ++ L   G+ AD
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKAD 80          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  102 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  S+  +  +  ++ L   G+ AD
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKAD 80          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 3
Query:   93 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            G GYD   + FSP+GR+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G+ AD
Sbjct:    5 GTGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 3
Query:   93 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            G GYD   + FSP+GR+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G+ AD
Sbjct:    5 GTGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 3
Query:   93 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            G GYD   + FSP+GR+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G+ AD
Sbjct:    5 GTGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLAD 84          
BLAST of CF504218 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 3
Query:   93 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 335
            G GYD   + FSP+GR+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G+ AD
Sbjct:    5 GTGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLAD 84          
The following BLAST results are available for this feature:
BLAST of CF504218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSA7_CICAR8.843e-1246.15Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA7_CAEEL8.843e-1247.44Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]
PSA7B_XENLA1.155e-1147.44Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA1.155e-1147.44Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA7A_ORYSJ1.155e-1144.87Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7A_ORYSI1.155e-1144.87Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA3_RAT1.155e-1144.44Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_MOUSE1.155e-1144.44Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA3_HUMAN1.155e-1144.44Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_BOVIN1.155e-1144.44Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-707 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504218 ID=CF504218; Name=CF504218; organism=Citrus sinensis; type=EST; length=336bp
TGCGGATTGATCCGACAAGTAGAACTGCGTGAAGAAGAAAATTGAAAGAG
AGGAATCACTGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGG
ATACGATCGTCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAG
TCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATTGGT
GTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGA
CAAGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGT
ACCTTGGATTGCTGGCAACTGGAATGACAGCTGATG
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