CF504219

Overview
NameCF504219
Unique NameCF504219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4030 contig Csv1_Contig4030:38..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.062e-38
Identity = 80/103 (77.67%), Postives = 83/103 (80.58%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RSVKAGLQFPVGRIGRYLKKGRY+QRVGTGAP                  GNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPNINPVLLPK
Sbjct:   24 TRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPK 126
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.062e-38
Identity = 80/103 (77.67%), Postives = 83/103 (80.58%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRSVK+GLQFPVGRIGRYLKKGRYS+RVGTGAP                  GNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPNINP+LLPK
Sbjct:   26 SRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPK 128
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.000e-38
Identity = 80/103 (77.67%), Postives = 82/103 (79.61%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRSVKAGLQFPVGRIGRYLKKGRY+Q VGTGAP                  GNAARDNKK RIIPRHVLLA+RNDEELGKLL GVTIAHGGVLPNINPVLLPK
Sbjct:   30 SRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPK 132
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.386e-37
Identity = 78/103 (75.73%), Postives = 84/103 (81.55%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            ++S+KAGLQFPVGRIGRYLKKGRY+QRVG+GAP                  GNAARDNKK+RIIPRHVLLAVRNDEELGKLLAGVTIA GGVLPNINPVLLPK
Sbjct:   23 TKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPK 125
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.422e-37
Identity = 77/103 (74.76%), Postives = 84/103 (81.55%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RSV+AGLQFPVGR+GR+LKKGRY+QRVGTGAP                  GNAARDNKKNRI PRH+LLAVRNDEELGKLLAGVTIA+GGVLPNINPVLLPK
Sbjct:   25 TRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPK 127
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 7.543e-37
Identity = 74/103 (71.84%), Postives = 85/103 (82.52%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RS+KAGLQFPVGRIGRYLKKGRY+QRVG+GAP                  GNAA+DNKK+RI+PRH+LLAVRND+ELG+LLAGVTIAHGGV+PNINPVLLPK
Sbjct:   23 TRSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKSRIVPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINPVLLPK 125
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.195e-36
Identity = 77/103 (74.76%), Postives = 83/103 (80.58%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RSV+AGLQFPVGRIGR+LKKGRY+QRVGTGAP                  GNAARDNKKNRI PRH+LLAVRND ELGKLLAGVTIA+GGVLPNINPVLLPK
Sbjct:   25 TRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPK 127
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 4.889e-36
Identity = 75/103 (72.82%), Postives = 83/103 (80.58%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RSVKAGLQFPVGRIGRYLKKGRY+QRVG+GAP                  GNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPK
Sbjct:   14 TRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPK 116
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 4.889e-36
Identity = 75/103 (72.82%), Postives = 83/103 (80.58%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RSVKAGLQFPVGRIGRYLKKGRY+QRVG+GAP                  GNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPK
Sbjct:   14 TRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPK 116
[Close]
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.385e-36
Identity = 71/103 (68.93%), Postives = 84/103 (81.55%), Query Frame = 3 
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            ++S+KAGLQFPVGRIGRYLKKGRY+QRVG+GAP                  GNAA+DNKK RI+PRH+LLA+RND+ELG+LL+GVTIAHGGV+PNINPVLLPK
Sbjct:   23 TKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLLPK 125
The following BLAST results are available for this feature:
BLAST of CF504219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_PETCR3.062e-3877.67Histone H2A OS=Petroselinum crispum PE=2 SV=1[more]
H2A4_ARATH3.062e-3877.67Probable histone H2A.4 OS=Arabidopsis thaliana GN=... [more]
H2A_MAIZE4.000e-3877.67Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A1_SOLLC3.386e-3775.73Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A1_PEA4.422e-3774.76Histone H2A.1 OS=Pisum sativum PE=2 SV=1[more]
H2A3_WHEAT7.543e-3771.84Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1[more]
H2A2_PEA2.195e-3674.76Histone H2A.2 OS=Pisum sativum PE=2 SV=1[more]
H2A5_WHEAT4.889e-3672.82Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 S... [more]
H2A1_WHEAT4.889e-3672.82Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 S... [more]
H2A2_WHEAT6.385e-3668.93Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-708 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504219 ID=CF504219; Name=CF504219; organism=Citrus sinensis; type=EST; length=502bp
CTCACATTGCGGTCACACAGTCACACTACATTTCTTTTAGTTTCCGTTTG
TTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTTCCCCCTAACTTCT
TCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAG
CAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCCCGGTCG
GTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAA
GAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTG
CTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAAT
GCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTGTT
GGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTTGCTGGGGTGACAA
TTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAA
AA
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