CF504219

Overview
NameCF504219
Unique NameCF504219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4030 contig Csv1_Contig4030:38..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 2.426e-35
Identity = 74/103 (71.84%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            +RSVKAGLQFPVGRIGRYLKKGRY+Q VG+GAP                  GNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPK
Sbjct:   14 TRSVKAGLQFPVGRIGRYLKKGRYAQAVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPK 116          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.573e-34
Identity = 73/103 (70.87%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            S+S+KAGLQFPVGRI R+LKKGRY+QR+G GAP                  GNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPNIN VLLPK
Sbjct:   26 SKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPK 128          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.966e-33
Identity = 72/103 (69.90%), Postives = 78/103 (75.73%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            S+SVKAGLQFPVGRI RYLKKGRY+ R G+GAP                  GNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVLLPK
Sbjct:   27 SKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPK 129          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.127e-32
Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KAGLQFPVGRI RYLKKG+Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEELGKLL  VTIA GGVLPNI+ VLLPK
Sbjct:   16 SRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPK 118          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.472e-32
Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KAGLQFPVGRI RYLKKG+Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEELGKLL  VTIA GGVLPNI+ VLLPK
Sbjct:   16 SRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPK 118          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.923e-32
Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500
            SRS KAGLQFPVGRI RYLKKG+Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEELGKLL  VTIA GGVLPNI+ VLLPK
Sbjct:   16 SRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPK 118          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 5.594e-32
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLP 497
            SRS +AGLQFPVGRI R+LK GRYS+RVGTGAP                  GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP
Sbjct:   21 SRSARAGLQFPVGRISRFLKHGRYSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLP 122          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 5.594e-32
Identity = 66/102 (64.71%), Postives = 76/102 (74.51%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLP 497
            SRS +AGLQFPVGRI R+LK GRYS+R+GTGAP                  GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP
Sbjct:   21 SRSARAGLQFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLP 122          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 5.594e-32
Identity = 66/102 (64.71%), Postives = 76/102 (74.51%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLP 497
            SRS +AGLQFPVGRI R+LK GRYS+R+GTGAP                  GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP
Sbjct:   21 SRSARAGLQFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLP 122          
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 7.306e-32
Identity = 66/102 (64.71%), Postives = 76/102 (74.51%), Query Frame = 3
Query:  192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLP 497
            SRS +AGLQFPVGRI R+LK GRYS+R+GTGAP                  GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP
Sbjct:   21 SRSARAGLQFPVGRISRFLKHGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLP 122          
The following BLAST results are available for this feature:
BLAST of CF504219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A6_WHEAT2.426e-3571.84Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 S... [more]
H2A7_ARATH1.573e-3470.87Probable histone H2A.7 OS=Arabidopsis thaliana GN=... [more]
H2A5_ARATH2.966e-3369.90Probable histone H2A.5 OS=Arabidopsis thaliana GN=... [more]
H2A3_VOLCA1.127e-3266.99Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2A_CHLRE1.472e-3266.99Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2A4_VOLCA1.923e-3266.99Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2AX_TETTH5.594e-3265.69Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P... [more]
H2A1_TETTH5.594e-3264.71Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 P... [more]
H2A1_TETPY5.594e-3264.71Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE... [more]
H2AX_TETPY7.306e-3264.71Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-708 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504219 ID=CF504219; Name=CF504219; organism=Citrus sinensis; type=EST; length=502bp
CTCACATTGCGGTCACACAGTCACACTACATTTCTTTTAGTTTCCGTTTG
TTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTTCCCCCTAACTTCT
TCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAG
CAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCCCGGTCG
GTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAA
GAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTG
CTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAAT
GCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTGTT
GGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTTGCTGGGGTGACAA
TTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAA
AA
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