CF504219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_DROHY (Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 8.931e-30 Identity = 67/103 (65.05%), Postives = 74/103 (71.84%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS +AGLQFPVGRI R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPK Sbjct: 16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPK 118
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_DROER (Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 8.931e-30 Identity = 67/103 (65.05%), Postives = 74/103 (71.84%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS +AGLQFPVGRI R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPK Sbjct: 16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPK 118
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_CHITH (Histone H2A OS=Chironomus thummi thummi PE=3 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 8.931e-30 Identity = 67/103 (65.05%), Postives = 73/103 (70.87%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS +AGLQFPVGRI R L+KG Y +RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPK Sbjct: 16 SRSSRAGLQFPVGRIHRLLRKGNYGERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPK 118
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AO_CHITH (Histone H2A, orphon OS=Chironomus thummi thummi PE=3 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 8.931e-30 Identity = 66/103 (64.08%), Postives = 74/103 (71.84%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS +AGLQFPVGRI R L+KG Y++R+G GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPK Sbjct: 16 SRSSRAGLQFPVGRIHRLLRKGHYAERIGAGAPVYLAAVMEYLGAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPK 118
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 8.931e-30 Identity = 67/103 (65.05%), Postives = 73/103 (70.87%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS +AGLQFPVGR+ R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI VLLPK Sbjct: 17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 119
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 8.931e-30 Identity = 67/103 (65.05%), Postives = 73/103 (70.87%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS +AGLQFPVGR+ R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI VLLPK Sbjct: 17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 119
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.166e-29 Identity = 66/103 (64.08%), Postives = 75/103 (72.82%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 +RS +AGLQFPVGR+ R+L+KG Y++RVG GAP GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI VLLPK Sbjct: 16 TRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 118
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.166e-29 Identity = 66/103 (64.08%), Postives = 73/103 (70.87%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS +AGLQFPVGR+ R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI VLLPK Sbjct: 17 SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 119
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.166e-29 Identity = 66/103 (64.08%), Postives = 73/103 (70.87%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS +AGLQFPVGR+ R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI VLLPK Sbjct: 17 SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 119
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.166e-29 Identity = 66/103 (64.08%), Postives = 75/103 (72.82%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 +RS +AGLQFPVGR+ R+L+KG Y++RVG GAP GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI VLLPK Sbjct: 16 TRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 118 The following BLAST results are available for this feature:
BLAST of CF504219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504219 ID=CF504219; Name=CF504219; organism=Citrus sinensis; type=EST; length=502bpback to top |