CF504219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.166e-29 Identity = 65/103 (63.11%), Postives = 75/103 (72.82%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS KAGLQFPVGRI R+LK G+Y++RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL KLL VTIA+GGV+PNI+ +LLPK Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.166e-29 Identity = 66/103 (64.08%), Postives = 73/103 (70.87%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS +AGLQFPVGR+ R+L+KG Y+QRVG GAP GNAA DNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI VLLPK Sbjct: 3 SRSSRAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVFEYLAAEILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 105
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.166e-29 Identity = 65/103 (63.11%), Postives = 75/103 (72.82%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS KAGLQFPVGRI R+LK G+Y++RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL KLL VTIA+GGV+PNI+ +LLPK Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 1.523e-29 Identity = 66/103 (64.08%), Postives = 74/103 (71.84%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 +RS +AGLQFPVGRI R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPK Sbjct: 16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPK 118
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_MYTTR (Histone H2A OS=Mytilus trossulus PE=3 SV=3) HSP 1 Score: 128.642 bits (322), Expect = 1.523e-29 Identity = 67/103 (65.05%), Postives = 74/103 (71.84%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS +AGLQFPVGRI R L+KG Y+ RVG GAP GNAARDNKK+RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPK Sbjct: 16 SRSSRAGLQFPVGRIHRLLRKGNYAGRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPK 118
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.523e-29 Identity = 65/102 (63.73%), Postives = 73/102 (71.57%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLP 497 SRS KAGLQFPVGRI R+LK G+Y++RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLP Sbjct: 24 SRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP 125
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.523e-29 Identity = 65/103 (63.11%), Postives = 74/103 (71.84%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS KAGLQFPVGRI R+LK G+Y+ RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL KLL VTIA+GGV+PNI+ +LLPK Sbjct: 18 SRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 1.990e-29 Identity = 66/103 (64.08%), Postives = 73/103 (70.87%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 +RS +AGLQFPVGR+ R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI VLLPK Sbjct: 17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 119
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 1.990e-29 Identity = 65/103 (63.11%), Postives = 74/103 (71.84%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 SRS +AGLQFPVGR+ R+L+KG Y++RVG GAP GNAARDNKK RI PRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPK Sbjct: 16 SRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPK 118
BLAST of CF504219 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 1.990e-29 Identity = 66/103 (64.08%), Postives = 73/103 (70.87%), Query Frame = 3 Query: 192 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 500 +RS +AGLQFPVGR+ R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI VLLPK Sbjct: 17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 119 The following BLAST results are available for this feature:
BLAST of CF504219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504219 ID=CF504219; Name=CF504219; organism=Citrus sinensis; type=EST; length=502bpback to top |