CF504220

Overview
NameCF504220
Unique NameCF504220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.962e-20
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRAR 62          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.962e-20
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRAR 62          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.962e-20
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRAR 62          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.962e-20
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRAR 62          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.962e-20
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRAR 62          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSRAR 62          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.608e-19
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSRAR 62          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.406e-19
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 227
            M +L+LQKRL+++VLKCG+ +VWLDPNEV+EIS ANSRQ+IR+LV DG IIRKP  +HSR RA
Sbjct:    1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRA 63          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 78.9518 bits (193), Expect = 8.681e-15
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 224
            M +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR
Sbjct:    1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSR 62          
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_PYRHO (50S ribosomal protein L19e OS=Pyrococcus horikoshii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.087e-12
Identity = 30/63 (47.62%), Postives = 50/63 (79.37%), Query Frame = 3
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 227
            M +LK+Q+R++A +LKCG  +VW+DP +V+E++ A +R++IR+L+K+G I +KP +  SR RA
Sbjct:    1 MNTLKMQRRIAAELLKCGENRVWIDPEKVDEVASAITREDIRRLIKEGVIRKKPIEGQSRYRA 63          
The following BLAST results are available for this feature:
BLAST of CF504220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL19_PONAB8.962e-2070.9760S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE8.962e-2070.9760S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA8.962e-2070.9760S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN8.962e-2070.9760S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]
RL19_BOVIN8.962e-2070.9760S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]
RL19_DANRE1.529e-1970.9760S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_ICTPU2.608e-1970.9760S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_CAEEL3.406e-1969.8460S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19_YEAST8.681e-1559.6860S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL19_PYRHO3.087e-1247.6250S ribosomal protein L19e OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-709 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504220 ID=CF504220; Name=CF504220; organism=Citrus sinensis; type=EST; length=229bp
GATCGCGAGAGAGAGAGGGGGAGAGAAGAGAAGAGAAAATGGTGTCGTTG
AAGTTACAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGGCAA
GGTCTGGCTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACTCCA
GGCAGAACATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCA
ACAAAGATCCACTCCCGTTCTCGTGCTCG
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