CF504220

Overview
NameCF504220
Unique NameCF504220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_PYRAB (50S ribosomal protein L19e OS=Pyrococcus abyssi GN=rpl19e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.087e-12
Identity = 29/63 (46.03%), Postives = 49/63 (77.78%), Query Frame = 3 
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 227
            M +LK+Q+R++A +LKCG  ++W+DP  V++++ A +R++IR+L+K+G I +KP K  SR RA
Sbjct:    1 MKTLKMQRRVAAELLKCGENRIWIDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYRA 63
[Close]
BLAST of CF504220 vs. ExPASy Swiss-Prot
Match: RL19_PYRFU (50S ribosomal protein L19e OS=Pyrococcus furiosus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 27/63 (42.86%), Postives = 49/63 (77.78%), Query Frame = 3 
Query:   39 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 227
            M +LK+Q+R++A +LKCG  ++W+DP  +++++ A +R++I++L+K+G I +KP K  SR RA
Sbjct:    1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRA 63
The following BLAST results are available for this feature:
BLAST of CF504220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL19_PYRAB3.087e-1246.0350S ribosomal protein L19e OS=Pyrococcus abyssi GN... [more]
RL19_PYRFU6.878e-1242.8650S ribosomal protein L19e OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-709 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504220 ID=CF504220; Name=CF504220; organism=Citrus sinensis; type=EST; length=229bp
GATCGCGAGAGAGAGAGGGGGAGAGAAGAGAAGAGAAAATGGTGTCGTTG
AAGTTACAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGGCAA
GGTCTGGCTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACTCCA
GGCAGAACATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCA
ACAAAGATCCACTCCCGTTCTCGTGCTCG
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