CF504238

Overview
NameCF504238
Unique NameCF504238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504238_ssr103 microsatellite CF504238_ssr103:103..114. BLAST: Citrus ESTs to Prunus persica proteins V1
CF504238_ssr116 microsatellite CF504238_ssr116:116..127. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL35_ARATH (GDSL esterase/lipase At2g19010 OS=Arabidopsis thaliana GN=At2g19010 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.075e-18
Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQNSPDGR 601
            GDRIS   Q++N++ ++ +        +  A  L +C+Y I +GSNDY+NNYF    Y+T R+YTP+QYA  LI  Y   L+ L+  GARK  + G+ QIGC+P  +  +S DG+
Sbjct:  119 GDRISIRKQLQNHKTSITKA-------NVPAERLQQCLYMINIGSNDYINNYFMSKPYNTKRRYTPKQYAYSLIIIYRSHLKNLHRLGARKVAVFGLSQIGCTPKIMKSHS-DGK 225          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL28_ARATH (GDSL esterase/lipase At1g71250 OS=Arabidopsis thaliana GN=At1g71250 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.648e-17
Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQN-SPDGR 601
            G R S + Q+ N + T+ Q+  ++  Q+   +YL+R +  +  GSNDY+NNY  P  Y +  ++ P  +A+LL+ QY +QL  LY+ G RK  + GV  +GC PNQ A+  SP  R
Sbjct:  135 GGRFSLNQQMVNLETTLSQLRTMMSPQN-FTDYLARSLVVLVFGSNDYINNYLMPNLYDSSIRFRPPDFANLLLSQYARQLLTLYSLGLRKIFIPGVAPLGCIPNQRARGISPPDR 249          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL64_ARATH (GDSL esterase/lipase At4g16230 OS=Arabidopsis thaliana GN=At4g16230 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  251 LQGDRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYT-PEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSP 568
            L G+RI+   Q+ N+  T Q +++ +G + +AA      I+S+  GSND +NNYF P+  +  R+   PE + D +I ++  QL  LY  GARK V+I +G IGC P
Sbjct:  122 LFGERINVDAQLDNFATTRQDIISWIG-ESEAAKLFRSAIFSVTTGSNDLINNYFTPVISTLQRKVVAPEVFVDTMISKFRLQLTRLYQLGARKIVVINIGPIGCIP 227          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL80_ARATH (GDSL esterase/lipase At5g37690 OS=Arabidopsis thaliana GN=At5g37690 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.478e-15
Identity = 41/105 (39.05%), Postives = 68/105 (64.76%), Query Frame = 2
Query:  263 RISFSGQVKNYQNTVQQVVNLLGNQDQAAN-YLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQ 574
            R++F+ Q+  ++ T + +   +G  D AAN +++  +Y IGLGSNDY+NN+ QP + + G+QYT +++ +LL      QL  +Y  GARK +  G+G +GC P+Q
Sbjct:  125 RLTFNDQINCFKKTKEVIRAKIG--DGAANKHVNDAMYFIGLGSNDYVNNFLQP-FMADGQQYTHDEFVELLTSTLHNQLTTIYKLGARKVIFHGLGPLGCIPSQ 226          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL68_ARATH (GDSL esterase/lipase At4g30140 OS=Arabidopsis thaliana GN=At4g30140 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.579e-14
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLA 580
            G+RIS   QV N+ + +      L         L +C+Y+I +GSNDYLNNYF        R + P+QYA  LI  Y   L  LY  GAR   L G+G+IGC+P  +A
Sbjct:  126 GERISLRQQVNNHFSAIITAAVPLSR-------LRQCLYTINIGSNDYLNNYFLSPPTLARRLFNPDQYARSLISLYRIYLTQLYVLGARNVALFGIGKIGCTPRIVA 226          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL58_ARATH (GDSL esterase/lipase At3g50400 OS=Arabidopsis thaliana GN=At3g50400 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.674e-14
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  260 DRISFSGQVKNYQNTVQQVVNLLGNQDQAANYL-SRCIYSIGLGSNDYLNNYFQPLYYSTGR-QYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQN 586
            +R+    QV  + NT +Q   LLG QD+A +Y+  R ++S+ +GSND+LNNY  P   +  R   TPE + D +I     QL+ LY+  ARKFV+  V  IGC P Q + N
Sbjct:  133 NRLGMDIQVDYFTNTRKQFDKLLG-QDKARDYIRKRSLFSVVIGSNDFLNNYLVPFVAAQARLTQTPETFVDDMISHLRNQLKRLYDMDARKFVVGNVAPIGCIPYQKSIN 242          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL87_ARATH (GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.168e-13
Identity = 41/111 (36.94%), Postives = 69/111 (62.16%), Query Frame = 2
Query:  257 GDRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQNS 589
            G  I  S QV N+ +  ++V+ L      A  +LS+ ++++ +GSND L +YF    +   RQ  P+QY  L+  +  +QL+ +++ GAR+F++IGV QIGC+P + A+NS
Sbjct:  141 GQAIPLSKQVNNWLSIHEEVMKL--EPSAAQLHLSKSLFTVVIGSND-LFDYFGS--FKLRRQSNPQQYTQLMADKLKEQLKRIHDSGARRFLIIGVAQIGCTPGKRAKNS 246          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL31_ARATH (GDSL esterase/lipase At1g74460 OS=Arabidopsis thaliana GN=At1g74460 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.151e-12
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  263 RISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLA 580
            R S   Q++ +Q T   VV  +G ++ A  +     Y + LGSND++NNY  P+Y S   +Y  + + D L++    QL+ L++ GARK ++ G+G +GC P Q A
Sbjct:  122 RFSLWKQIELFQGTQDVVVAKIGKKE-ADKFFQDARYVVALGSNDFINNYLMPVY-SDSWKYNDQTFVDYLMETLESQLKVLHSLGARKLMVFGLGPMGCIPLQRA 225          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: GDL38_ARATH (GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.565e-12
Identity = 44/115 (38.26%), Postives = 68/115 (59.13%), Query Frame = 2
Query:  260 DRISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSR-CIYSIGLGSNDYLNNYFQPLYYSTGRQYT--PEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQNSPD 595
            +R+    QV  +  T +Q  +LLG +++A +Y+++  I+SI +G+ND+LNNY  PL  S G ++T  P+ +   +++    QL  LY   ARKFV+  VG IGC P Q   N  D
Sbjct:  147 NRLGMDVQVDFFNTTRKQFDDLLG-KEKAKDYIAKKSIFSITIGANDFLNNYLFPLL-SVGTRFTQTPDDFIGDMLEHLRDQLTRLYQLDARKFVIGNVGPIGCIPYQKTINQLD 259          
BLAST of CF504238 vs. ExPASy Swiss-Prot
Match: LTL1_ARATH (GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 37/111 (33.33%), Postives = 64/111 (57.66%), Query Frame = 2
Query:  266 ISFSGQVKNYQNTVQQVVNLLGNQDQAANYLSRCIYSIGLGSNDYLNNYFQPLYYSTGRQYTPEQYADLLIQQYTQQLQALYNYGARKFVLIGVGQIGCSPNQLAQNSPDG 598
            I  S Q++ ++    +V  L+G  +     +++ +  I LG ND++NNY+   + +  RQY    Y   LI +Y + L+ LY  GAR+ ++ G G +GC+P +LAQ+S +G
Sbjct:  127 IRISKQMEYFEQYQLRVSALIG-PEATQQLVNQALVLITLGGNDFVNNYYLIPFSARSRQYALPDYVVYLISEYGKILRKLYELGARRVLVTGTGAMGCAPAELAQHSRNG 236          
The following BLAST results are available for this feature:
BLAST of CF504238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GDL35_ARATH1.075e-1841.74GDSL esterase/lipase At2g19010 OS=Arabidopsis thal... [more]
GDL28_ARATH2.648e-1738.79GDSL esterase/lipase At1g71250 OS=Arabidopsis thal... [more]
GDL64_ARATH8.518e-1639.25GDSL esterase/lipase At4g16230 OS=Arabidopsis thal... [more]
GDL80_ARATH2.478e-1539.05GDSL esterase/lipase At5g37690 OS=Arabidopsis thal... [more]
GDL68_ARATH3.579e-1440.74GDSL esterase/lipase At4g30140 OS=Arabidopsis thal... [more]
GDL58_ARATH4.674e-1441.44GDSL esterase/lipase At3g50400 OS=Arabidopsis thal... [more]
GDL87_ARATH5.168e-1336.94GDSL esterase/lipase At5g55050 OS=Arabidopsis thal... [more]
GDL31_ARATH1.151e-1235.85GDSL esterase/lipase At1g74460 OS=Arabidopsis thal... [more]
GDL38_ARATH2.565e-1238.26GDSL esterase/lipase At2g23540 OS=Arabidopsis thal... [more]
LTL1_ARATH7.462e-1233.33GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-727 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504238 ID=CF504238; Name=CF504238; organism=Citrus sinensis; type=EST; length=602bp
CTCAGAGGAGTCAATTATGCATCTGCAGCTGCTGGTATCAGGGAGGAAAC
TGGTCGACAGCTGGTAAATAAAAAGAAAATAATCAATCCCATTAATTAGT
TAATTTATTTATTTAATGCATGCATGCATATATGAACTTTAATAATGTCC
ATTTCATATCAACAAATAATTAACAATAACATGCATCAACTGATGAAGTG
TGAATCCTGAAATAACTAATGTTATACATACATGCACATGCAATATTATA
TTGCAGGGAGATCGAATCAGTTTTAGTGGGCAGGTAAAGAATTACCAAAA
CACGGTTCAGCAAGTAGTGAACTTACTAGGAAATCAAGATCAAGCTGCTA
ATTACCTGAGCCGATGCATATACTCAATCGGATTAGGCAGCAACGACTAC
CTCAACAACTACTTCCAGCCCCTCTATTATTCAACCGGTCGTCAATACAC
CCCCGAGCAGTATGCAGACCTTCTTATTCAACAGTACACTCAGCAACTTC
AGGCGTTGTACAACTATGGGGCAAGGAAATTTGTGTTGATTGGAGTGGGA
CAGATAGGGTGCAGCCCGAATCAATTGGCTCAAAACAGTCCAGATGGGAG
AA
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