CF504247

Overview
NameCF504247
Unique NameCF504247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYLC_ENTBH (Probable leucyl-tRNA synthetase, cytoplasmic OS=Enterocytozoon bieneusi (strain H348) GN=EBI_21702 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.018e-20
Identity = 53/144 (36.81%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    4 FCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYA--DRVFENEINIAVEMTDQHYKNYMFREALKTGFYD 429
            F + NH AI  + +WP+    NGH++LN  KMSKS GNF ++  A+E F   ATR  LA  GD  +DANFV   AN+ +L+L       + +  + S+ ++   + Y   D    + I I  E T   Y+N ++R+ +K GFY+
Sbjct:  522 FFLMNHVAIFKENNWPKRIYTNGHLLLNGLKMSKSEGNFLSVDTALERFGTSATRMCLAICGDTNEDANFVESMANSFVLKL---YTLSQNIFLISSNNQSVNVADYTLIDYYLISSIKINEEKTFTSYENIVYRDVIKYGFYN 662          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL_AERPE (Leucyl-tRNA synthetase OS=Aeropyrum pernix GN=leuS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.976e-17
Identity = 53/150 (35.33%), Postives = 83/150 (55.33%), Query Frame = 1
Query:    4 FCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFS--LADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPS----TYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQ 435
            F I++HTAI  +  WPR    NG +++  EKMSKS GNF  L+QA++ + ADATR++  LA A  G+DDANF    A++ +  L++ + ++ E          G P+     + DR FE+ +N  +    +  +   F+ AL   +Y LQ
Sbjct:  607 FFIFHHTAIFPRELWPRAIGVNGWVLVAGEKMSKSKGNFILLRQALDWWGADATRWAEVLAGADSGLDDANFEPSVADSAVSLLSQWLDFVRE--------NYGRPARREERWVDRWFESRLNSTIARVTRLMEEANFKTALVEAWYKLQ 748          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL_PYRFU (Leucyl-tRNA synthetase OS=Pyrococcus furiosus GN=leuS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.013e-12
Identity = 46/146 (31.51%), Postives = 68/146 (46.58%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLA--VESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL 432
            TF I+NH AI  ++HWP+G   NG   L  +KMSKS GN      AIEE  AD  R  +    +   D    FD     + RL K+I    E+++   E   R        D+   + +N A++ T    + +  R A++  FY +
Sbjct:  619 TFFIFNHVAIFPEKHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSD----FDWRRKEVGRLRKQIERFYELISQFAEYEARENVELKDIDKWMLHRLNKAIKGTTDALEEFRTRTAVQWAFYTI 760          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL_PYRHO (Leucyl-tRNA synthetase OS=Pyrococcus horikoshii GN=leuS PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 45/146 (30.82%), Postives = 68/146 (46.58%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLA--VESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL 432
            TF I+NH AI  + HWP+G   NG   L  +KMSKS GN      AIEE  AD  R  +    +   D    FD     + +L K+I    E+++   E  ++        DR   + +N A++ T    + +  R A++  FY +
Sbjct:  619 TFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSD----FDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSI 760          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL_NANEQ (Leucyl-tRNA synthetase OS=Nanoarchaeum equitans GN=leuS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 48/145 (33.10%), Postives = 74/145 (51.03%), Query Frame = 1
Query:    4 FCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDG--VD---DANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGF 423
            F I++H AI  +  WPRG   +G + +N EKMSKS GNF T+++AI+ +  DA R + A AG+   VD   D  F+    N  I R+   +  ME     E+SL         D+   N I +  +  +++Y+N   R+ +   F
Sbjct:  669 FYIFHHVAIFPESKWPRGIAVSGFVTVNGEKMSKSKGNFITIREAIQRYGRDAVRLAAAYAGNAELVDQNIDLEFMEKAKNEIIPRIESYLD-MEGYDRDENSL---------DKWIVNRIRLYFKKLEEYYENIRPRDVINEFF 803          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL_METJA (Leucyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=leuS PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.949e-12
Identity = 40/136 (29.41%), Postives = 67/136 (49.26%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREA 408
            TF I+NH AI  +  WPRG   NG++ +  +K+SKS G    + +  E+F AD  RF +    +   DA+  F         L +   + +E+   E    TG   +Y D+   + +  AV+  D++ +N+  R+A
Sbjct:  602 TFYIFNHVAIFPEEFWPRGIVVNGYVTIEGKKLSKSKGPVLPVLEVAEKFGADVGRFYITTCAELPQDADIKFKEMENTKKVLERLYLFAKEI--AERRGETGEEFSYIDKWLLSRLYKAVKQYDEYMENFELRKA 735          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL_THEON (Leucyl-tRNA synthetase OS=Thermococcus onnurineus (strain NA1) GN=leuS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 46/146 (31.51%), Postives = 71/146 (48.63%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESS--LRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL 432
            TF I+NH AI  + HWPRG   NG   L  +KMSKS GN      AIEE  AD  R  +     G+ + +  FD     + +L K++    E+++  +S   + G      DR   + +N A+E   +  + +  R A++  FY +
Sbjct:  619 TFFIFNHVAIFRKGHWPRGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIM----GLAEHDSDFDWRRKEVGKLRKQVERFYELVSEFASYEAKEGVELKDIDRWMLHRLNKAIEGATKGLEEFRTRTAVQWAFYSV 760          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL1_SULSO (Leucyl-tRNA synthetase 1 OS=Sulfolobus solfataricus GN=leuS1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 39/150 (26.00%), Postives = 74/150 (49.33%), Query Frame = 1
Query:    4 FCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 453
            F IYNH AI  +++ P+    NG + +   KMSKS  N  TL +AI+EF  D  R +L    D + D +F  +  N    +L K    ++ +L++ + ++       AD    +++   +E  + +  ++ +R+A+    Y++     +Y
Sbjct:  586 FYIYNHLAIFGEKYLPKRIVINGFVRVGGRKMSKSLRNIYTLSKAIKEFGVDPVRIALTSTSDLLQDLDFNENLVNPIAEQLKKIYDLIDRLLSINTEIK---ELRTADEWISSKVRDIIEKVNNNITSFKYRDAVNLLLYEIYEILRDY 732          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL_PYRAB (Leucyl-tRNA synthetase OS=Pyrococcus abyssi GN=leuS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.030e-12
Identity = 43/146 (29.45%), Postives = 68/146 (46.58%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLA--VESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL 432
            TF I+NH AI  + HWP+G   NG   L  +KMSKS GN      AIEE  AD  R  +    +   D    FD     + +L +++    E+++   E   +        D+   + +N A+E T +  + +  R A++  FY +
Sbjct:  619 TFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSD----FDWRRKEVGKLRRQLERFYELISQFAEYEAKENVELKTIDKWLLHRLNKAIEGTTKALEEFRTRTAVQWAFYSI 760          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL_PYRKO (Leucyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=leuS PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 44/144 (30.56%), Postives = 69/144 (47.92%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLA--VESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFY 426
            TF I+NH AI  ++HWP+G   NG   L  +KMSKS GN      AIEE  AD  R  +     G+ + +  FD     + +L K++    E+++       + G      DR   + +N A+E   +  + +  R A++  FY
Sbjct:  619 TFFIFNHVAIFDKKHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIM----GLAEHDSDFDWRRKEVGKLRKQVERFYELVSEFATYEAKEGVELKDIDRWMLHRLNKAIEGATKALEEFRTRTAVQWAFY 758          
The following BLAST results are available for this feature:
BLAST of CF504247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SYLC_ENTBH5.018e-2036.81Probable leucyl-tRNA synthetase, cytoplasmic OS=En... [more]
SYL_AERPE3.976e-1735.33Leucyl-tRNA synthetase OS=Aeropyrum pernix GN=leuS... [more]
SYL_PYRFU1.013e-1231.51Leucyl-tRNA synthetase OS=Pyrococcus furiosus GN=l... [more]
SYL_PYRHO1.729e-1230.82Leucyl-tRNA synthetase OS=Pyrococcus horikoshii GN... [more]
SYL_NANEQ1.729e-1233.10Leucyl-tRNA synthetase OS=Nanoarchaeum equitans GN... [more]
SYL_METJA2.949e-1229.41Leucyl-tRNA synthetase OS=Methanocaldococcus janna... [more]
SYL_THEON3.851e-1231.51Leucyl-tRNA synthetase OS=Thermococcus onnurineus ... [more]
SYL1_SULSO3.851e-1226.00Leucyl-tRNA synthetase 1 OS=Sulfolobus solfataricu... [more]
SYL_PYRAB5.030e-1229.45Leucyl-tRNA synthetase OS=Pyrococcus abyssi GN=leu... [more]
SYL_PYRKO6.569e-1230.56Leucyl-tRNA synthetase OS=Pyrococcus kodakaraensis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-736 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504247 ID=CF504247; Name=CF504247; organism=Citrus sinensis; type=EST; length=453bp
ACTTTTTGCATTTATAACCACACAGCAATCATGTCCCAGCGCCACTGGCC
TCGTGGATTTAGGTGTAATGGTCACATTATGCTTAATTCTGAGAAGATGT
CCAAGTCTACCGGGAATTTTAGGACGTTGAAGCAGGCCATTGAGGAATTC
TCTGCAGATGCCACACGATTTTCTCTGGCTGATGCTGGAGATGGTGTAGA
TGATGCAAATTTCGTATTTGACACTGCAAATACTGGAATCCTTCGGCTCA
CCAAGGAGATTGCATGGATGGAGGAGGTACTGGCTGTGGAATCGTCTTTG
AGAACTGGTCCACCATCTACTTATGCTGATAGGGTGTTTGAGAACGAGAT
AAATATTGCTGTTGAAATGACTGATCAGCATTACAAGAACTACATGTTCC
GAGAAGCTCTAAAAACGGGCTTTTATGATCTTCAAGCTGCAAGGGATGAA
TAT
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