CF504247

Overview
NameCF504247
Unique NameCF504247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL_THENV (Leucyl-tRNA synthetase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=leuS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.496e-11
Identity = 47/151 (31.13%), Postives = 71/151 (47.02%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 453
            TF I+NH AI  +  WPR    NG ++   EKMSKS  N   L +A+E +  D  R +LA A +   D +F    A     +L   I  + + L   +  R   P T+ D+    EI+  +E   + Y+    R+A     Y+ +A  D+Y
Sbjct:  607 TFFIFNHVAIFPREKWPRQIVANGWVLREGEKMSKSKRNVLPLDRAVEMYGPDPLRATLALAAEVEQDLDFRDAEARRNAQQL-MSIYTLAQRLVQGAEER---PPTWVDQWLVAEISRVLERAREAYEKVRVRQAAVEVLYNAKAVFDQY 753          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL_METTP (Leucyl-tRNA synthetase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=leuS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.496e-11
Identity = 42/143 (29.37%), Postives = 65/143 (45.45%), Query Frame = 1
Query:    4 FCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL 432
            F +Y+H AI  +  WPR    NG + L  +KMSKS G   TLKQA+ E  AD TR  +    +   DA++  D A     ++ +      E++   + +      T  DR   + +   +  T     N   R AL++ FY +
Sbjct:  599 FFLYHHVAIFPESLWPRAIAVNGFVSLEGQKMSKSRGPILTLKQAVAENGADVTRLYILANAEYTQDADWRNDGAQATRGQVERFYTLAREIIE-RNDIDESAELTLIDRWMLSRLQRRIIETTDALNNIQTRRALQSAFYHM 740          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL_PYRAR (Leucyl-tRNA synthetase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=leuS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 46/151 (30.46%), Postives = 71/151 (47.02%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVFDTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDLQAARDEY 453
            TF I+NH AI  +  WPR    NG ++   EKMSKS  N   L +A+E +  D  R +LA + +   D +F    A     +L   I  + + LA  +  R     T+ DR   +E+ +A+E     Y+    R+A     Y+++   D Y
Sbjct:  607 TFFIFNHVAIFPREKWPRQIVANGWVLREGEKMSKSKRNVLPLDKAVEMYGPDPLRATLAISAEVEQDLDFRHAEAVRNAQQL-MSIYTLAQRLAQSAEDR---EPTWLDRWLLSEVALALERVRDAYEKVRVRQAAVELLYNIKNIFDSY 753          
BLAST of CF504247 vs. ExPASy Swiss-Prot
Match: SYL_METM5 (Leucyl-tRNA synthetase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=leuS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 38/147 (25.85%), Postives = 70/147 (47.62%), Query Frame = 1
Query:    1 TFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGNFRTLKQAIEEFSADATRFSLADAGDGVDDANFVF---DTANTGILRLTKEIAWMEEVLAVESSLRTGPPSTYADRVFENEINIAVEMTDQHYKNYMFREALKTGFYDL 432
            TF I+NH A+  + HWPRG   NG++ +  +K+SKS G    + +  E F AD  RF +    +   DA+  F   + A   +++L       E  ++V    +T    +  D+   ++   ++   +  Y+ +  R+ +   FY+L
Sbjct:  616 TFMIFNHVALFGREHWPRGIEINGYVTIEGKKLSKSKGPVLPVSEVAENFGADVARFYITTCAELPQDADVKFKEMEKARDNLIKL------YELAVSVMEEEKTEKELSLIDKWLLHKTYSSINGAETAYEEFQLRK-IGLMFYEL 755          
The following BLAST results are available for this feature:
BLAST of CF504247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SYL_THENV2.496e-1131.13Leucyl-tRNA synthetase OS=Thermoproteus neutrophil... [more]
SYL_METTP2.496e-1129.37Leucyl-tRNA synthetase OS=Methanosaeta thermophila... [more]
SYL_PYRAR9.486e-1130.46Leucyl-tRNA synthetase OS=Pyrobaculum arsenaticum ... [more]
SYL_METM59.486e-1125.85Leucyl-tRNA synthetase OS=Methanococcus maripaludi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-736 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504247 ID=CF504247; Name=CF504247; organism=Citrus sinensis; type=EST; length=453bp
ACTTTTTGCATTTATAACCACACAGCAATCATGTCCCAGCGCCACTGGCC
TCGTGGATTTAGGTGTAATGGTCACATTATGCTTAATTCTGAGAAGATGT
CCAAGTCTACCGGGAATTTTAGGACGTTGAAGCAGGCCATTGAGGAATTC
TCTGCAGATGCCACACGATTTTCTCTGGCTGATGCTGGAGATGGTGTAGA
TGATGCAAATTTCGTATTTGACACTGCAAATACTGGAATCCTTCGGCTCA
CCAAGGAGATTGCATGGATGGAGGAGGTACTGGCTGTGGAATCGTCTTTG
AGAACTGGTCCACCATCTACTTATGCTGATAGGGTGTTTGAGAACGAGAT
AAATATTGCTGTTGAAATGACTGATCAGCATTACAAGAACTACATGTTCC
GAGAAGCTCTAAAAACGGGCTTTTATGATCTTCAAGCTGCAAGGGATGAA
TAT
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