CF504255

Overview
NameCF504255
Unique NameCF504255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504255 vs. ExPASy Swiss-Prot
Match: CSLA5_ORYSJ (Probable mannan synthase 5 OS=Oryza sativa subsp. japonica GN=CSLA5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 38/119 (31.93%), Postives = 62/119 (52.10%), Query Frame = 1 
Query:    4 ELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRAK-ISMGXXXXXXXXXXXXXXXXXXXYSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSV 357
            ELP +Y+AY +QQ RW  G   LFR  + D++ AK +S                      +F L+ +I+P+++ IPE  LP W V YIP  +  +  +  P++   +  ++LFE+ MS+
Sbjct:  351 ELPSTYKAYCRQQFRWSCGGANLFRKMIWDVLVAKKVSSLKKIYILYSFFLVRRVVAPAVAFILYNVIIPVSVMIPELFLPIWGVAYIPTALLIVTAIRNPENLHTVPLWILFESVMSM 469
[Close]
BLAST of CF504255 vs. ExPASy Swiss-Prot
Match: CSLA7_ORYSJ (Probable mannan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLA7 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11
Identity = 38/119 (31.93%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:    4 ELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRAK-ISMGXXXXXXXXXXXXXXXXXXXYSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSV 357
            ELP +Y AY +QQ RW  G   LFR    D++ AK IS+                     +  L+ II+P+++ IPE  +P W V YIP  +  +  +  P++   +  ++LFE+ M+V
Sbjct:  366 ELPSTYGAYCRQQFRWACGGANLFRKIAMDVLVAKDISLLKKFYMLYSFFLVRRVVAPMVACVLYNIIVPLSVMIPELFIPIWGVAYIPMALLIITTIRNPRNLHIMPFWILFESVMTV 484
The following BLAST results are available for this feature:
BLAST of CF504255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CSLA5_ORYSJ3.973e-1231.93Probable mannan synthase 5 OS=Oryza sativa subsp. ... [more]
CSLA7_ORYSJ4.393e-1131.93Probable mannan synthase 7 OS=Oryza sativa subsp. ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-744 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504255 ID=CF504255; Name=CF504255; organism=Citrus sinensis; type=EST; length=362bp
TGTGAATTGCCAGAATCTTATGAAGCTTATAGGAAACAACAGCACAGATG
GCATTCTGGACCAATGCAGTTGTTTCGCTTGTGCTTGCCTGACATCATAA
GAGCCAAGATAAGCATGGGGAAGAAATTTAATTTGATCTTTCTTTTCTTT
CTGCTCAGAAAACTTATCCTACCATTTTATTCTTTCACCCTCTTTTGTAT
AATTCTTCCCATGACAATGTTTATCCCAGAGGCTGAGCTCCCTGCTTGGG
TCGTCTGTTACATACCGGCCACCATGTCATTTCTCAACATTCTCCCTGCT
CCAAAATCCTTCCCATTTATTGTCCCTTACCTTCTTTTTGAAAACACAAT
GTCAGTGACCAA
back to top