CF504257

Overview
NameCF504257
Unique NameCF504257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length283
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: LAX1_ORYSJ (Auxin transporter-like protein 1 OS=Oryza sativa subsp. japonica GN=Os01g0856500 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.039e-18
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 3
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSFSQLGMLSG+L QLFYG +GSW
Sbjct:   62 SCASNQVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSW 100          

HSP 2 Score: 36.5798 bits (83), Expect = 5.039e-18
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 2
Query:  107 KSKLSNFFWHGGSVYDAWFS 166
            K  + N  WHGGSV+DAWFS
Sbjct:   43 KFSMKNLLWHGGSVWDAWFS 62          
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: LAX4_MEDTR (Auxin transporter-like protein 4 OS=Medicago truncatula GN=LAX4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.554e-18
Identity = 33/39 (84.62%), Postives = 39/39 (100.00%), Query Frame = 3
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSFSQLGM+SGI+FQ+FYGL+GSW
Sbjct:   54 SCASNQVAQVLLTLPYSFSQLGMVSGIVFQIFYGLIGSW 92          

HSP 2 Score: 35.039 bits (79), Expect = 6.554e-18
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  122 NFFWHGGSVYDAWFS 166
            +F WHGGSV+DAWFS
Sbjct:   40 SFLWHGGSVWDAWFS 54          
BLAST of CF504257 vs. ExPASy Swiss-Prot
Match: LAX1_ARATH (Auxin transporter-like protein 1 OS=Arabidopsis thaliana GN=LAX1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.108e-17
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 3
Query:  165 ACSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW 281
            +C+SNQVAQVLLTLPYSFSQLGMLSGIL Q+FYGL+GSW
Sbjct:   59 SCASNQVAQVLLTLPYSFSQLGMLSGILLQIFYGLMGSW 97          

HSP 2 Score: 34.2686 bits (77), Expect = 1.108e-17
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  116 LSNFFWHGGSVYDAWFS 166
            + +F WHGGS +DAWFS
Sbjct:   43 MKSFLWHGGSAWDAWFS 59          
The following BLAST results are available for this feature:
BLAST of CF504257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
LAX1_ORYSJ5.039e-1884.62Auxin transporter-like protein 1 OS=Oryza sativa s... [more]
LAX4_MEDTR6.554e-1884.62Auxin transporter-like protein 4 OS=Medicago trunc... [more]
LAX1_ARATH1.108e-1787.18Auxin transporter-like protein 1 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-746 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504257 ID=CF504257; Name=CF504257; organism=Citrus sinensis; type=EST; length=283bp
TTAGTATTAGAGAAGCAGGGCTAAAATGGCAGCTGATAAGGTAGTGGAGA
CAGTGGTTGTCGGGAACTATGTCGAAATGGAGACTGAAGGGAAGCCACAG
AACATGAAATCAAAGCTTTCCAATTTCTTTTGGCATGGTGGCTCTGTTTA
CGATGCTTGGTTTAGCCTGTTCGTCAAATCAGGTGGCTCAAGTGCTACTC
ACTTTGCCGTATTCATTTTCCCAGCTGGGGATGCTCTCCGGGATCCTCTT
TCAGCTCTTCTATGGGTTGCTTGGGAGCTGGAC
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