CF504261 | Citrus Genome Database

Overview


Name	CF504261
Unique Name	CF504261
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	413

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIG_RAT (Peptidyl-prolyl cis-trans isomerase G OS=Rattus norvegicus GN=Ppig PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.763e-31
Identity = 66/117 (56.41%), Postives = 74/117 (63.25%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSG-KPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+V ELF+DV P+T ENFR LCTGEKG GKS  KPLHYK   FHRV+  FM Q            ESIYG  F DE+F  KH    +LSMAN G  TNGSQFF+ T  T  LDG H+
Sbjct:   23 RVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHV 139

HSP 2 Score: 25.409 bits (54), Expect = 2.763e-31
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIE 398
            VFGQV+ G +VV+ IE
Sbjct:  140 VFGQVISGQEVVREIE 155

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIG_MOUSE (Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.763e-31
Identity = 66/117 (56.41%), Postives = 74/117 (63.25%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSG-KPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+V ELF+DV P+T ENFR LCTGEKG GKS  KPLHYK   FHRV+  FM Q            ESIYG  F DE+F  KH    +LSMAN G  TNGSQFF+ T  T  LDG H+
Sbjct:   23 RVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHV 139

HSP 2 Score: 25.409 bits (54), Expect = 2.763e-31
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIE 398
            VFGQV+ G +VV+ IE
Sbjct:  140 VFGQVISGQEVVREIE 155

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIG_HUMAN (Peptidyl-prolyl cis-trans isomerase G OS=Homo sapiens GN=PPIG PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.763e-31
Identity = 66/117 (56.41%), Postives = 74/117 (63.25%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSG-KPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+V ELF+DV P+T ENFR LCTGEKG GKS  KPLHYK   FHRV+  FM Q            ESIYG  F DE+F  KH    +LSMAN G  TNGSQFF+ T  T  LDG H+
Sbjct:   23 RVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHV 139

HSP 2 Score: 25.409 bits (54), Expect = 2.763e-31
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIE 398
            VFGQV+ G +VV+ IE
Sbjct:  140 VFGQVISGQEVVREIE 155

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.647e-31
Identity = 66/116 (56.90%), Postives = 75/116 (64.66%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVM L+    P+TAENFRAL TGEKG G       Y+GS+FHRVI  FM Q            +SIYG KF DENF  KH+  G+LSMANAG  TNGSQFF+ T  T WLDGKH+
Sbjct:   50 RIVMGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKQFMIQGGDFTKGDGTGGKSIYGDKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHV 158

HSP 2 Score: 26.1794 bits (56), Expect = 3.647e-31
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIE 398
            VFG+V+EG DVV+ IE
Sbjct:  159 VFGEVLEGYDVVEKIE 174

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.666e-31
Identity = 66/116 (56.90%), Postives = 76/116 (65.52%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIV+ L+    P TAENFRAL TGEKG G       Y+GS+FHRVI  FM Q            +SIYG+KF DENF  +HT  G+LSMANAG  TNGSQFF+ TA T WLDGKH+
Sbjct:   49 RIVLGLYGKTVPETAENFRALATGEKGFG-------YEGSNFHRVIKDFMIQGGDFTRGDGTGGKSIYGAKFKDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHV 157

HSP 2 Score: 25.409 bits (54), Expect = 3.666e-31
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKV 404
            VFG+V+EG D+V  I+ V
Sbjct:  158 VFGEVLEGYDIVDKIQNV 175

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.668e-31
Identity = 64/116 (55.17%), Postives = 73/116 (62.93%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+V+ LF    P+T ENF AL TGEKG G       +KGS FHRVI  FM Q            +SIYG +F DENF  KH GPG +SMANAG  TNGSQFF+ T KT WLDGKH+
Sbjct:   50 RVVIGLFGKTVPKTVENFVALATGEKGFG-------FKGSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHV 158

HSP 2 Score: 28.1054 bits (61), Expect = 3.668e-31
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIE 398
            VFG+V+EGMDVV+ +E
Sbjct:  159 VFGKVLEGMDVVRKVE 174

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.783e-31
Identity = 63/116 (54.31%), Postives = 75/116 (64.66%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+V+ L+    P+TAENFRAL TGEKG G       Y+GS+FHRVI  FM Q            +SIYG KF DENF  +HT  G+LSMANAG  TNGSQFF+ T  T WLDG+H+
Sbjct:   35 RVVLGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKEFMIQGGDFTRGDGTGGKSIYGEKFKDENFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHV 143

HSP 2 Score: 28.1054 bits (61), Expect = 4.783e-31
Identity = 12/18 (66.67%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKV 404
            VFG+V+EG +VV+AIE V
Sbjct:  144 VFGEVLEGYEVVEAIENV 161

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.790e-31
Identity = 62/117 (52.99%), Postives = 74/117 (63.25%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RI MELF  +TPRTAENFR  CTGE      G+P  YK S FHRVI  FM Q             +IYG+ +F DENF+ KH  PG+LSMAN+GP TNG QFF+ T  T +L+ KH+
Sbjct:   29 RIKMELFTSITPRTAENFRQFCTGESK-SPQGRPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHV 144

HSP 2 Score: 31.187 bits (69), Expect = 4.790e-31
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIE 398
            VFGQVVEGMDVV+ IE
Sbjct:  145 VFGQVVEGMDVVRMIE 160

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIB_ASPNG (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.216e-31
Identity = 64/116 (55.17%), Postives = 76/116 (65.52%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+V+ L+    P+TAENFRAL TGEKG G       Y+GS+FHRVI  FM Q            +SIYG KFADENF  +HT  G+LSMANAG  TNGSQFF+ T  T WLDG+H+
Sbjct:   50 RVVLGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKDFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHV 158

HSP 2 Score: 25.0238 bits (53), Expect = 6.216e-31
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKV 404
            VFG+V+EG ++V  IE V
Sbjct:  159 VFGEVLEGYEIVAQIENV 176

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.218e-31
Identity = 63/116 (54.31%), Postives = 76/116 (65.52%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIV+ L+    P+TAENF+ L TGE G G       YKGS+FHRVI  FM Q            +SIYG++FADENF  +H+ PG+LSMANAG  TNGSQFF+ T  T WLDGKH+
Sbjct:   49 RIVLGLYGKTVPKTAENFKQLATGENGYG-------YKGSTFHRVIKKFMIQGGDFTNHDGTGGKSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHV 157

HSP 2 Score: 27.335 bits (59), Expect = 6.218e-31
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIE 398
            VFG+V+EGMDVV  IE
Sbjct:  158 VFGRVLEGMDVVTKIE 173

The following BLAST results are available for this feature:

BLAST of CF504261 vs. ExPASy Swiss-Prot

BLAST of CF504261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220


Match Name	E-value	Identity	Description
PPIG_RAT	2.763e-31	56.41	Peptidyl-prolyl cis-trans isomerase G OS=Rattus no...	[more]
PPIG_MOUSE	2.763e-31	56.41	Peptidyl-prolyl cis-trans isomerase G OS=Mus muscu...	[more]
PPIG_HUMAN	2.763e-31	56.41	Peptidyl-prolyl cis-trans isomerase G OS=Homo sapi...	[more]
PPIB_NEUCR	3.647e-31	56.90	Peptidyl-prolyl cis-trans isomerase B OS=Neurospor...	[more]
PPIB_EMENI	3.666e-31	56.90	Peptidyl-prolyl cis-trans isomerase B OS=Emericell...	[more]
PPIB_CHICK	3.668e-31	55.17	Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga...	[more]
PPIB_ASPOR	4.783e-31	54.31	Peptidyl-prolyl cis-trans isomerase B OS=Aspergill...	[more]
PPIH_ASPOR	4.790e-31	52.99	Peptidyl-prolyl cis-trans isomerase H OS=Aspergill...	[more]
PPIB_ASPNG	6.216e-31	55.17	Peptidyl-prolyl cis-trans isomerase B OS=Aspergill...	[more]
PPIB1_RHIOR	6.218e-31	54.31	Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-750 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504261 ID=CF504261; Name=CF504261; organism=Citrus sinensis; type=EST; length=413bp
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAG
CCTCTCCACTACAAAGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACATTT
GTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAGGCCATCGAGAA
AGTGGGGTCCAGC