CF504261

Overview
NameCF504261
Unique NameCF504261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIH_RHIOR (Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus oryzae GN=cyp7 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.582e-28
Identity = 62/117 (52.99%), Postives = 77/117 (65.81%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+ MELF+D+ PRTAENFR LCTGE    ++G P  YK   FHRVI  FM Q              IYG  +FADENF++KHTG G+LSMAN+GP +NG QFF+     ++LDGKH+
Sbjct:   26 RMKMELFSDIVPRTAENFRQLCTGE--YKRNGVPQGYKNCLFHRVIKDFMVQGGDFIKGDGTGAMCIYGGDRFADENFIEKHTGAGLLSMANSGPNSNGCQFFITCDACDFLDGKHV 140          

HSP 2 Score: 21.557 bits (44), Expect = 4.582e-28
Identity = 8/20 (40.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG++V+G+  ++ IE V +
Sbjct:  141 VFGRLVDGLLTLRKIENVAT 160          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 5.948e-28
Identity = 60/116 (51.72%), Postives = 70/116 (60.34%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            +IV+ LF +V P+T +NF  L    +G G       Y GS FHRVI  FM Q             SIYG +F DENF  +H GPG LSMANAG  TNGSQFF+ TAKT WLDGKH+
Sbjct:   41 KIVIGLFGEVVPKTVKNFVELAQRAEGEG-------YVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHV 149          

HSP 2 Score: 28.1054 bits (61), Expect = 5.948e-28
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAIE 398
            VFG+++EGMDVV+ IE
Sbjct:  150 VFGKILEGMDVVREIE 165          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: NKTR_MOUSE (NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.750e-28
Identity = 61/117 (52.14%), Postives = 76/117 (64.96%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RI+ +LF+D+ P+T +NF  LC+GEKG+GK+ GK L YKGS+FHRV+  FM Q            ESIYG  F DENF+ KH    +LSMAN G  TNGSQFF+ T     LDG H+
Sbjct:   22 RIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHV 138          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: NKTR_HUMAN (NK-tumor recognition protein OS=Homo sapiens GN=NKTR PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.750e-28
Identity = 61/117 (52.14%), Postives = 76/117 (64.96%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RI+ +LF+D+ P+T +NF  LC+GEKG+GK+ GK L YKGS+FHRV+  FM Q            ESIYG  F DENF+ KH    +LSMAN G  TNGSQFF+ T     LDG H+
Sbjct:   22 RIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHV 138          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.741e-28
Identity = 62/116 (53.45%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIV+ LF    P+TA NF  L    KG G       Y GS FHRVI  FM Q             SIYG KFADENF  KH G G LSMANAG  TNGSQFF+ T KT WLDG+H+
Sbjct:   44 RIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHV 152          

HSP 2 Score: 28.4906 bits (62), Expect = 7.741e-28
Identity = 11/17 (64.71%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAIEK 401
            VFG+++EGMDVV+ IE+
Sbjct:  153 VFGKILEGMDVVRKIEQ 169          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIH_USTMA (Peptidyl-prolyl cis-trans isomerase H (Fragment) OS=Ustilago maydis GN=CYP3 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 7.792e-28
Identity = 61/116 (52.59%), Postives = 72/116 (62.07%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+  ELF+D+ PRT+ENFR LCTGE     +  P  YK S FHR+I  FMCQ             SIYG KF DENF  KH   G+LSMAN+GPGTNG QFF+      +LDGKH+
Sbjct:    5 RLKCELFSDIVPRTSENFRQLCTGE--FRPNHVPEGYKNSIFHRIIKDFMCQGGDFINADGTGSRSIYGDKFDDENFTLKHDKAGLLSMANSGPGTNGCQFFITAQPCPFLDGKHV 118          

HSP 2 Score: 21.1718 bits (43), Expect = 7.792e-28
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAIEKV 404
            VFG+VV+G+  ++ +E V
Sbjct:  119 VFGKVVDGLLTLRKMENV 136          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.964e-27
Identity = 63/115 (54.78%), Postives = 72/115 (62.61%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            I  ELF +V P+T +NF +LC G +   K G+ L YKGS FHRVI  FM Q            ESIYG KF DENF  KH  P +LSMANAGP TNGSQFF+ T  T  LDGKH+
Sbjct:   19 IYFELFDNVVPKTVKNFASLCNGFE---KDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHV 130          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.066e-26
Identity = 62/118 (52.54%), Postives = 69/118 (58.47%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHICV 355
            RIV  L+    PRT ENFRA CTGE G   +G    Y+GS FHRVI GFM Q             SIYG  F DEN   KH  P +LSMAN GP TNGSQFF+ + +   LDGKH CV
Sbjct:   24 RIVFSLWNHCCPRTVENFRAFCTGELGK-MNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTGGYSIYGRTFDDENLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKH-CV 139          

HSP 2 Score: 28.4906 bits (62), Expect = 1.066e-26
Identity = 11/18 (61.11%), Postives = 17/18 (94.44%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAIEKV 404
            VFG+V++G++VVKAIE +
Sbjct:  139 VFGEVIKGVEVVKAIENL 156          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.095e-25
Identity = 58/117 (49.57%), Postives = 71/117 (60.68%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKP-LHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RI ++LF    P+T ENFRALCTGE G+  + K  LHYKG+  HRV+  FM Q             SIYG  F DE FV KH+ P +LSMAN GP +N SQFF+ TA     +GKH+
Sbjct:   21 RIEIKLFTSEAPKTCENFRALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHV 137          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.556e-24
Identity = 60/116 (51.72%), Postives = 71/116 (61.21%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIV+EL  DV P+T +NF         +G   K   YKGS+FHRVI  FM Q             SIYG +F DENF  KH   G++SMANAGP TNGSQFF+ T KTEWLDG+H+
Sbjct:   38 RIVLELRGDVVPKTVKNF---------IGLFDK---YKGSTFHRVIADFMIQGGDFENHNGTGGHSIYGPRFEDENFTLKHDR-GVISMANAGPNTNGSQFFITTVKTEWLDGRHV 140          
The following BLAST results are available for this feature:
BLAST of CF504261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
PPIH_RHIOR4.582e-2852.99Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus ... [more]
CYP6_CAEEL5.948e-2851.72Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
NKTR_MOUSE6.750e-2852.14NK-tumor recognition protein OS=Mus musculus GN=Nk... [more]
NKTR_HUMAN6.750e-2852.14NK-tumor recognition protein OS=Homo sapiens GN=NK... [more]
CYP5_CAEEL7.741e-2853.45Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
PPIH_USTMA7.792e-2852.59Peptidyl-prolyl cis-trans isomerase H (Fragment) O... [more]
PPID_SCHPO1.964e-2754.7840 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
CYP8_CAEEL1.066e-2652.54Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
CYP9_CAEBR4.095e-2549.57Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIA_NEOCA1.556e-2451.72Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-750 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504261 ID=CF504261; Name=CF504261; organism=Citrus sinensis; type=EST; length=413bp
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAG
CCTCTCCACTACAAAGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACATTT
GTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAGGCCATCGAGAA
AGTGGGGTCCAGC
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