CF504261

Overview
NameCF504261
Unique NameCF504261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.723e-24
Identity = 56/117 (47.86%), Postives = 70/117 (59.83%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKP-LHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RI + LF +  P+T ENFRALCTGE G+  + K  LHYK + FHR++  FM Q             SIYG  F DE F  KH+ P +LSMAN GP +N SQFF+ TA     +GKH+
Sbjct:   20 RIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRIVKKFMIQGGDITEGDGRGGFSIYGRYFDDEKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHV 136          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.329e-23
Identity = 56/116 (48.28%), Postives = 66/116 (56.90%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVM L+   TP+T ENF  L      + +  K + Y  S FHRVIP FM Q            +SI+G+ F DENF  KH  PG LSMAN G  TNGSQFF+ T    WLDGKH+
Sbjct:   49 RIVMGLYGLTTPQTVENFYQLT-----ISRDPK-MGYLNSIFHRVIPNFMIQGGDFTHRSGIGGKSIFGNTFKDENFDVKHDKPGRLSMANRGKNTNGSQFFITTVPCPWLDGKHV 158          

HSP 2 Score: 27.7202 bits (60), Expect = 1.329e-23
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAIEKV 404
            VFG+V++GMDVV  IE V
Sbjct:  159 VFGEVLDGMDVVHYIENV 176          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYPB_YEAST (Peptidyl-prolyl cis-trans isomerase B OS=Saccharomyces cerevisiae GN=CPR2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.734e-23
Identity = 57/117 (48.72%), Postives = 67/117 (57.26%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTA-KTEWLDGKHI 349
            RIV+ L+  V P+TA+NF  L T      K G    + GS+FHRVIP FM Q            +SIYG  F DENF  KH   G LSMAN G  TNGSQFF+ T  +  WLDGKH+
Sbjct:   51 RIVIGLYGKVCPKTAKNFYKLSTTTNS--KKG----FIGSTFHRVIPNFMVQGGDFTDGTGVGGKSIYGDTFPDENFTLKHDRKGRLSMANRGKDTNGSQFFITTTEEASWLDGKHV 161          

HSP 2 Score: 28.8758 bits (63), Expect = 1.734e-23
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAIEKV 404
            VFGQVV+GMDVV  I+ V
Sbjct:  162 VFGQVVDGMDVVNYIQHV 179          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIL6_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo sapiens GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.236e-23
Identity = 50/116 (43.10%), Postives = 66/116 (56.90%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R++ EL+ DV P+T +NF+ LCTG+ G  + G  LHYK S FHR++     Q            ESIYG  F DENF   H   G+L MAN G  +NGSQF++    T +LD K +
Sbjct:  157 RLIFELYCDVCPKTCKNFQVLCTGKAGFSQRGIRLHYKNSIFHRIVQNGWIQGGDIVYGKGDNGESIYGPTFEDENFSVPHNKRGVLGMANKGRHSNGSQFYITLQATPYLDRKFV 272          

HSP 2 Score: 24.2534 bits (51), Expect = 2.236e-23
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  354 FGQVVEGMDVVKAIEKV 404
            FGQ++EG +V+K +E V
Sbjct:  274 FGQLIEGTEVLKQLELV 290          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIL6_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.343e-23
Identity = 49/116 (42.24%), Postives = 66/116 (56.90%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R++ EL++D  P+T +NF+ LCTG+ G  +SG  LHY GS FHRV+     Q            ESIYG  F DENF   H   G+L M N G  +NGSQF++      +LD K++
Sbjct:  153 RLIFELYSDTCPKTCKNFQILCTGKAGFSQSGIKLHYTGSIFHRVVRNGWVQGGDIVAGKGDNGESIYGPTFEDENFSVPHNKRGVLGMVNKGRHSNGSQFYITLQAAPYLDKKYV 268          

HSP 2 Score: 23.8682 bits (50), Expect = 8.343e-23
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  354 FGQVVEGMDVVKAIEKV 404
            FGQ++EG DV+  +E V
Sbjct:  270 FGQLIEGTDVLHHLESV 286          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYPR_CALVI (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Calliphora vicina GN=NINAA PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.568e-21
Identity = 50/115 (43.48%), Postives = 60/115 (52.17%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKH 346
            RIV  LF    P+T  NFR +C   +G+  +     Y GS FHRVI  F+ Q             SIYG  F DE    +H  PG L MAN GP TNG QF+V T   +WL+GKH
Sbjct:   41 RIVFGLFGKRAPKTVTNFRHICL--RGINGTT----YVGSEFHRVISRFLIQGGDIVNNDGTGSTSIYGDFFQDEALDVEHLRPGYLGMANRGPDTNGCQFYVTTVAAQWLNGKH 149          

HSP 2 Score: 29.261 bits (64), Expect = 9.568e-21
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAIEKV 404
            VFG+V+EGMD V AIE V
Sbjct:  151 VFGKVIEGMDTVYAIEDV 168          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIL1_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhizopus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.127e-20
Identity = 58/115 (50.43%), Postives = 66/115 (57.39%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKH 346
            I +EL+ D  PRT +NF  L           K  +Y G SFHR+I  FM Q             SIYG +FADE N   +HTG GILSMANAGP TNGSQFF+  A T WLDGKH
Sbjct:   16 IHIELYWDHAPRTCKNFYELA----------KRGYYDGVSFHRIIADFMIQGGDPTGTGRGGT-SIYGERFADEINPGLQHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKH 119          

HSP 2 Score: 21.9422 bits (45), Expect = 2.127e-20
Identity = 8/13 (61.54%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  351 VFGQVVEGMDVVK 389
            +FG+V +GM+VVK
Sbjct:  121 IFGRVSDGMNVVK 133          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.027e-20
Identity = 49/117 (41.88%), Postives = 61/117 (52.14%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADEN--FVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKH 346
            RI   LF  + P+T  NFR +C   +G+  +     Y GS FHRV+  F+ Q             SIYG  F DE+     +H  PG L MAN GP TNG QF+V T   +WLDGKH
Sbjct:   42 RITFGLFGKLAPKTVANFRHICL--RGINGTS----YVGSRFHRVVDRFLVQGGDIVNGDGTGSISIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDGKH 152          

HSP 2 Score: 28.1054 bits (61), Expect = 6.027e-20
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAIEKV 404
            VFG+V+EGMD + AIE V
Sbjct:  154 VFGKVLEGMDTIYAIEDV 171          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIB_TREPA (Probable peptidyl-prolyl cis-trans isomerase OS=Treponema pallidum GN=ppiB PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.329e-19
Identity = 54/115 (46.96%), Postives = 64/115 (55.65%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKH 346
            IV+ LF +  P T  NF  L  G   V K G+P  Y+G +FHRVI  FM Q                G +F DE +   +H  PG+LSMANAGPGTNGSQFF+    T WLDGKH
Sbjct:   51 IVLSLFFEKAPLTVCNFVGLAEGTLAVCK-GRPF-YQGLTFHRVIKDFMIQGGDPQGNGTGGP----GYQFPDECDPALRHDSPGVLSMANAGPGTNGSQFFITHVATPWLDGKH 159          

HSP 2 Score: 26.9498 bits (58), Expect = 1.329e-19
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAI 395
            VFG+VVEGM+VV AI
Sbjct:  161 VFGKVVEGMEVVHAI 175          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIL1_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibberella zeae GN=CYP1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.728e-19
Identity = 54/115 (46.96%), Postives = 65/115 (56.52%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKH 346
            +++EL+    P+T  NF  L    +G        +Y  + FHR+IP FM Q             SI+G KF DE +   KHTG GILSMANAGP TNGSQFFV  A T WLDGKH
Sbjct:   14 LILELYTTHAPKTCNNFTTLV--RRG--------YYDNTIFHRIIPNFMVQGGDPTGTGRGG-SSIFGEKFEDEIDPGLKHTGAGILSMANAGPNTNGSQFFVTLAPTPWLDGKH 117          
The following BLAST results are available for this feature:
BLAST of CF504261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
CYP9_CAEEL7.723e-2447.86Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
CYPD_YEAST1.329e-2348.28Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
CYPB_YEAST1.734e-2348.72Peptidyl-prolyl cis-trans isomerase B OS=Saccharom... [more]
PPIL6_HUMAN2.236e-2343.10Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo... [more]
PPIL6_BOVIN8.343e-2342.24Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos ... [more]
CYPR_CALVI9.568e-2143.48Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
PPIL1_RHIOR2.127e-2050.43Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhiz... [more]
CYPR_DROME6.027e-2041.88Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
PPIB_TREPA1.329e-1946.96Probable peptidyl-prolyl cis-trans isomerase OS=Tr... [more]
PPIL1_GIBZE5.728e-1946.96Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibb... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-750 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504261 ID=CF504261; Name=CF504261; organism=Citrus sinensis; type=EST; length=413bp
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAG
CCTCTCCACTACAAAGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACATTT
GTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAGGCCATCGAGAA
AGTGGGGTCCAGC
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