CF504261

Overview
NameCF504261
Unique NameCF504261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYP7_YEAST (Peptidyl-prolyl cis-trans isomerase CYP7 OS=Saccharomyces cerevisiae GN=CPR7 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.851e-13
Identity = 50/140 (35.71%), Postives = 61/140 (43.57%), Query Frame = 2
Query:    2 RIVMELFADVTPRTAENFRALCTGE-KGVGKSGKPLHYKGSSFHRVIPGFM-----------------------CQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAG-PGTNGSQFFVCTAKTEWLDGKH 346
            RIV +LF +  P+T ENF  LC G+ K   K  + L YKG+ FHRV+  FM                       C             ES     F DEN + +   P  L MAN G P TN SQFF+ T     L+GKH
Sbjct:   20 RIVCKLFREKAPKTTENFYKLCAGDVKSPLKDQQYLSYKGNGFHRVVKNFMIQAGDIVFGTQKDSSSSSVGKGGCSIYADKEEVKTDDESFCYGNFEDEN-LGEFVEPFTLGMANLGSPNTNNSQFFITTYAAPHLNGKH 158          

HSP 2 Score: 24.6386 bits (52), Expect = 1.851e-13
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAIE 398
            +FGQVV G  VV+ IE
Sbjct:  160 IFGQVVHGKSVVRTIE 175          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYP10_CAEEL (Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorhabditis elegans GN=cyn-10 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.215e-13
Identity = 48/116 (41.38%), Postives = 58/116 (50.00%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKH 346
            I +EL+ D  P+  ENF ALC  +          +Y G  FHR I  FM Q            ESI+G  F DE FV   KH   G +SMAN GP +N SQFF+  AK   LD K+
Sbjct:   12 IKIELYVDDAPKACENFLALCASD----------YYNGCIFHRNIKDFMVQTGDPTHSGKGG-ESIWGGPFEDE-FVSALKHDSRGCVSMANNGPDSNRSQFFITYAKQAHLDMKY 115          

HSP 2 Score: 22.7126 bits (47), Expect = 3.215e-13
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAIEKV 404
            +FG+V++G D ++ IE +
Sbjct:  117 LFGKVIDGFDTLEEIETI 134          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIL3_DICDI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dictyostelium discoideum GN=ppil3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.425e-13
Identity = 46/108 (42.59%), Postives = 55/108 (50.93%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAK 322
            I +E+F D  P  +ENF ALC             +Y  + FHR I GFM Q            ESI+  +F DE F    KH   GILSMAN+GP TNGSQFF+   K
Sbjct:   12 IKVEIFCDSVPLASENFLALCASN----------YYNNTIFHRNIKGFMIQGGDPTNTGRGG-ESIWKKQFKDE-FPSHLKHNTRGILSMANSGPDTNGSQFFITYGK 107          

HSP 2 Score: 23.483 bits (49), Expect = 5.425e-13
Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  351 VFGQVVEGMDVVKAIEKV 404
            VFG+++ G++V+  +EKV
Sbjct:  117 VFGKIIAGIEVLDLMEKV 134          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_MYCTU (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium tuberculosis GN=ppiA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13
Identity = 50/120 (41.67%), Postives = 61/120 (50.83%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGK---SGKPL--HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKH 346
            I + LF +  P+T  NF  L  G K       SG P    Y G+ FHRVI GFM Q                G KFADE   + +   P +L+MANAGPGTNGSQFF+   KT  L+ +H
Sbjct:   26 IKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRH 141          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_MYCBO (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium bovis GN=ppiA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13
Identity = 50/120 (41.67%), Postives = 61/120 (50.83%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGK---SGKPL--HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKH 346
            I + LF +  P+T  NF  L  G K       SG P    Y G+ FHRVI GFM Q                G KFADE   + +   P +L+MANAGPGTNGSQFF+   KT  L+ +H
Sbjct:   26 IKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRH 141          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPI1_STAES (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0648 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 46/106 (43.40%), Postives = 56/106 (52.83%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAK 322
            +  +LF D+ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYGS F DE  ++     G LSMANAGP TNGSQFF+   K
Sbjct:   27 MTFKLFPDIAPKTVENFVTH-------SKNG---YYDGVTFHRVINDFMVQGGDPTATGMGG-ESIYGSAFEDEFSLEAFNLYGALSMANAGPNTNGSQFFIVQMK 121          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPI1_STAEQ (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0540 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 46/106 (43.40%), Postives = 56/106 (52.83%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAK 322
            +  +LF D+ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYGS F DE  ++     G LSMANAGP TNGSQFF+   K
Sbjct:   27 MTFKLFPDIAPKTVENFVTH-------SKNG---YYDGVTFHRVINDFMVQGGDPTATGMGG-ESIYGSAFEDEFSLEAFNLYGALSMANAGPNTNGSQFFIVQMK 121          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYP9_SCHPO (Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosaccharomyces pombe GN=cyp9 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 45/115 (39.13%), Postives = 58/115 (50.43%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKH 346
            I ++L+ +  P+  +NF      E G        +Y  + FHR+I  FM Q            ESI+   F DE     KH  P  +SMAN+GP TNGSQFF+ T  T WLDGKH
Sbjct:  466 ISIKLYPEEAPKAVQNFTT--HAENG--------YYDNTIFHRIIKNFMIQGGDPLGDGTGG-ESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKH 569          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPI1_STAHJ (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1997 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12
Identity = 46/106 (43.40%), Postives = 55/106 (51.89%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAK 322
            +  +LF D+ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYG  F DE  ++     G LSMANAGP TNGSQFFV   K
Sbjct:   27 MTFKLFPDIAPKTVENFVTHA-------KNG---YYDGITFHRVINDFMIQGGDPTATGMGG-ESIYGGSFEDEFSLEAFNLYGALSMANAGPNTNGSQFFVVQMK 121          
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_MYCLE (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium leprae GN=ppiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 49/120 (40.83%), Postives = 61/120 (50.83%), Query Frame = 2
Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGK---SGKPL--HYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKH 346
            I + LF +  P+T  NF  L  G K       SG P    Y G+ FHRVI GFM Q                G KFADE   + +   P +L+MANAGPGTNGSQFF+   +T  L+ +H
Sbjct:   26 IKVALFGNHVPKTVANFVGLAQGTKEYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGETPHLNRRH 141          
The following BLAST results are available for this feature:
BLAST of CF504261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
CYP7_YEAST1.851e-1335.71Peptidyl-prolyl cis-trans isomerase CYP7 OS=Saccha... [more]
CYP10_CAEEL3.215e-1341.38Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorha... [more]
PPIL3_DICDI5.425e-1342.59Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dict... [more]
PPIA_MYCTU6.134e-1341.67Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIA_MYCBO6.134e-1341.67Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPI1_STAES1.046e-1243.40Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAEQ1.046e-1243.40Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
CYP9_SCHPO1.366e-1239.13Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosac... [more]
PPI1_STAHJ1.785e-1243.40Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPIA_MYCLE2.331e-1240.83Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-750 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504261 ID=CF504261; Name=CF504261; organism=Citrus sinensis; type=EST; length=413bp
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAG
CCTCTCCACTACAAAGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACATTT
GTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAGGCCATCGAGAA
AGTGGGGTCCAGC
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