CF504261

Overview
NameCF504261
Unique NameCF504261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.456e-43
Identity = 77/116 (66.38%), Postives = 87/116 (75.00%), Query Frame = 2 
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+V+EL ADV P+TAENFRALCTGEKG G       YKGS+FHRVIP FMCQ            +SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKH+
Sbjct:   60 RVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHV 168

HSP 2 Score: 31.5722 bits (70), Expect = 2.456e-43
Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 3 
Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG V EGMDVVK IE  GS
Sbjct:  169 VFGHVKEGMDVVKKIESFGS 188
[Close]
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.456e-43
Identity = 77/116 (66.38%), Postives = 87/116 (75.00%), Query Frame = 2 
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+V+EL ADV P+TAENFRALCTGEKG G       YKGS+FHRVIP FMCQ            +SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKH+
Sbjct:   61 RVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHV 169

HSP 2 Score: 31.5722 bits (70), Expect = 2.456e-43
Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 3 
Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG V EGMDVVK IE  GS
Sbjct:  170 VFGHVKEGMDVVKKIESFGS 189
[Close]
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.200e-43
Identity = 77/116 (66.38%), Postives = 86/116 (74.14%), Query Frame = 2 
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+V+EL ADV P+TAENFRALCTGEKG G       YKGS+FHRVIP FMCQ             SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKH+
Sbjct:   60 RVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHV 168

HSP 2 Score: 31.5722 bits (70), Expect = 3.200e-43
Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 3 
Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG V EGMDVVK IE  GS
Sbjct:  169 VFGHVKEGMDVVKKIESFGS 188
[Close]
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_PONPY (Peptidyl-prolyl cis-trans isomerase A OS=Pongo pygmaeus GN=PPIA PE=2 SV=4)

HSP 1 Score: 165.236 bits (417), Expect = 3.212e-43
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 2 
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKH+
Sbjct:   19 RVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHV 127

HSP 2 Score: 29.6462 bits (65), Expect = 3.212e-43
Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V EGM++V+A+E+ GS
Sbjct:  128 VFGKVKEGMNIVEAMERFGS 147
[Close]
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_PAPAN (Peptidyl-prolyl cis-trans isomerase A OS=Papio anubis GN=PPIA PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.212e-43
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 2 
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKH+
Sbjct:   19 RVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHV 127

HSP 2 Score: 29.6462 bits (65), Expect = 3.212e-43
Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V EGM++V+A+E+ GS
Sbjct:  128 VFGKVKEGMNIVEAMERFGS 147
[Close]
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_PANTR (Peptidyl-prolyl cis-trans isomerase A OS=Pan troglodytes GN=PPIA PE=3 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.212e-43
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 2 
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKH+
Sbjct:   19 RVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHV 127

HSP 2 Score: 29.6462 bits (65), Expect = 3.212e-43
Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V EGM++V+A+E+ GS
Sbjct:  128 VFGKVKEGMNIVEAMERFGS 147
[Close]
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_PANPA (Peptidyl-prolyl cis-trans isomerase A OS=Pan paniscus GN=PPIA PE=3 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.212e-43
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 2 
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKH+
Sbjct:   19 RVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHV 127

HSP 2 Score: 29.6462 bits (65), Expect = 3.212e-43
Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V EGM++V+A+E+ GS
Sbjct:  128 VFGKVKEGMNIVEAMERFGS 147
[Close]
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_MACMU (Peptidyl-prolyl cis-trans isomerase A OS=Macaca mulatta GN=PPIA PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.212e-43
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 2 
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKH+
Sbjct:   19 RVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHV 127

HSP 2 Score: 29.6462 bits (65), Expect = 3.212e-43
Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V EGM++V+A+E+ GS
Sbjct:  128 VFGKVKEGMNIVEAMERFGS 147
[Close]
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_HYLSY (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates syndactylus GN=PPIA PE=3 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.212e-43
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 2 
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKH+
Sbjct:   19 RVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHV 127

HSP 2 Score: 29.6462 bits (65), Expect = 3.212e-43
Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V EGM++V+A+E+ GS
Sbjct:  128 VFGKVKEGMNIVEAMERFGS 147
[Close]
BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLE (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates leucogenys GN=PPIA PE=3 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.212e-43
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 2 
Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKH+
Sbjct:   19 RVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHV 127

HSP 2 Score: 29.6462 bits (65), Expect = 3.212e-43
Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V EGM++V+A+E+ GS
Sbjct:  128 VFGKVKEGMNIVEAMERFGS 147
The following BLAST results are available for this feature:
BLAST of CF504261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
PPIF_RAT2.456e-4366.38Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_HUMAN2.456e-4366.38Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE3.200e-4366.38Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_PONPY3.212e-4368.10Peptidyl-prolyl cis-trans isomerase A OS=Pongo pyg... [more]
PPIA_PAPAN3.212e-4368.10Peptidyl-prolyl cis-trans isomerase A OS=Papio anu... [more]
PPIA_PANTR3.212e-4368.10Peptidyl-prolyl cis-trans isomerase A OS=Pan trogl... [more]
PPIA_PANPA3.212e-4368.10Peptidyl-prolyl cis-trans isomerase A OS=Pan panis... [more]
PPIA_MACMU3.212e-4368.10Peptidyl-prolyl cis-trans isomerase A OS=Macaca mu... [more]
PPIA_HYLSY3.212e-4368.10Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HYLLE3.212e-4368.10Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-750 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504261 ID=CF504261; Name=CF504261; organism=Citrus sinensis; type=EST; length=413bp
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAG
CCTCTCCACTACAAAGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACATTT
GTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAGGCCATCGAGAA
AGTGGGGTCCAGC
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