CF504261 | Citrus Genome Database

Overview


Name	CF504261
Unique Name	CF504261
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	413

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.207e-42
Identity = 78/116 (67.24%), Postives = 85/116 (73.28%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CT KTEWLDGKH+
Sbjct:   19 RVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHV 127

HSP 2 Score: 29.6462 bits (65), Expect = 1.207e-42
Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V EGM++V+A+E+ GS
Sbjct:  128 VFGKVKEGMNIVEAMERFGS 147

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.207e-42
Identity = 78/116 (67.24%), Postives = 85/116 (73.28%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CT KTEWLDGKH+
Sbjct:   19 RVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHV 127

HSP 2 Score: 29.6462 bits (65), Expect = 1.207e-42
Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V EGM++V+A+E+ GS
Sbjct:  128 VFGKVKEGMNIVEAMERFGS 147

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 1.573e-42
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKH+
Sbjct:   19 RVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHV 127

HSP 2 Score: 28.1054 bits (61), Expect = 1.573e-42
Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V EGM +V+A+E  GS
Sbjct:  128 VFGRVKEGMSIVEAMEHFGS 147

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.671e-42
Identity = 81/116 (69.83%), Postives = 86/116 (74.14%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVMEL ADV P+TAENFRALCTGEKG G       YKGS+FHRVIPGFMCQ            +SIYG KFADENF  KHT PGILSMANAG  TNGSQFF+CTA T WLDGKH+
Sbjct:   19 RIVMELRADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHV 127

HSP 2 Score: 28.4906 bits (62), Expect = 2.671e-42
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG V +G+D++K +E  GS
Sbjct:  128 VFGAVTQGLDIIKKVESYGS 147

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.479e-42
Identity = 79/116 (68.10%), Postives = 89/116 (76.72%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RI+MELF DV P+TAENFRALCTGEKG+G SGK + Y+GS FHRVIP FM Q            ESIYG+KFADENF+ KHT PG+LSMANAGPGTNGSQFF+ T  T  LDGKH+
Sbjct:   17 RIIMELFPDV-PKTAENFRALCTGEKGIGPSGKKMTYEGSVFHRVIPKFMLQGGDFTLGNGRGGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHV 131

HSP 2 Score: 29.6462 bits (65), Expect = 3.479e-42
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIE 398
            VFG+VVEGMDVV+ IE
Sbjct:  132 VFGKVVEGMDVVRKIE 147

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.891e-42
Identity = 73/115 (63.48%), Postives = 81/115 (70.43%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKH 346
            RIV  L+    P+T ENFRALCTGEKG+G SGKPLHYK S FHR+IP FM Q            ESIYG KF DENF  KH+ PG+LSMANAGP TNGSQFF+ T  T WLDG+H
Sbjct:   45 RIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRH 159

HSP 2 Score: 34.6538 bits (78), Expect = 5.891e-42
Identity = 13/20 (65.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V+EGMD+VK +E +GS
Sbjct:  161 VFGEVIEGMDIVKLLESIGS 180

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.690e-42
Identity = 77/115 (66.96%), Postives = 84/115 (73.04%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKH 346
            R+  +LF+D  P+TAENFRALCTGEKG G SGKPLHYKGS FHR+IPGFM Q            ESIYG KF DENF  KHTG G+LSMANAGP TNGSQFF+   KT WLDG H
Sbjct:   22 RLTFKLFSDTVPKTAENFRALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNH 136

HSP 2 Score: 24.6386 bits (52), Expect = 7.690e-42
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFGQ+VEG  V++ +E+ G+
Sbjct:  138 VFGQLVEGNQVLEILEQHGT 157

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.003e-41
Identity = 77/116 (66.38%), Postives = 84/116 (72.41%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVMEL +DV P+TAENFRALCTGEKG G       YKGS FHRVIP FMCQ            +SIYG+KF DENF  KHTGPGIL MANAGP TNGSQFF+ TAKT WLD +H+
Sbjct:   19 RIVMELRSDVVPKTAENFRALCTGEKGFG-------YKGSRFHRVIPNFMCQGGDFTNHNGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHV 127

HSP 2 Score: 33.8834 bits (76), Expect = 1.003e-41
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG VVEGMDVVK +E +GS
Sbjct:  128 VFGSVVEGMDVVKKLESLGS 147

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.208e-41
Identity = 77/116 (66.38%), Postives = 83/116 (71.55%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVMEL +DV P+TAENFRALCTGEKG G       YKGS FHRVIP FMCQ            +SIYG+KF DENF  KHTG GILSMANAG  TNGSQFF+CT KT WLD KH+
Sbjct:   82 RIVMELRSDVVPKTAENFRALCTGEKGFG-------YKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHV 190

HSP 2 Score: 33.4982 bits (75), Expect = 2.208e-41
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+VVEG+DVVK IE  GS
Sbjct:  191 VFGEVVEGLDVVKKIESYGS 210

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.926e-40
Identity = 77/116 (66.38%), Postives = 82/116 (70.69%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVMEL ADV P+TAENFRALCTGEKG G       YKG SFHRVIP FM Q            +SIYG+KF DENF  KHTGPG LSMANAGP TNGSQFF+ T K  WLDGKH+
Sbjct:   19 RIVMELRADVVPQTAENFRALCTGEKGFG-------YKGCSFHRVIPEFMLQGGDFTNHNGTGGKSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHV 127

HSP 2 Score: 31.5722 bits (70), Expect = 6.926e-40
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V EGMDVV+ IE +GS
Sbjct:  128 VFGRVTEGMDVVQNIESLGS 147

The following BLAST results are available for this feature:

BLAST of CF504261 vs. ExPASy Swiss-Prot

BLAST of CF504261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220


Match Name	E-value	Identity	Description
PPIA_SAGOE	1.207e-42	67.24	Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ...	[more]
PPIA_AOTTR	1.207e-42	67.24	Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri...	[more]
PPIA_RABIT	1.573e-42	68.10	Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag...	[more]
PPIA_HEMPU	2.671e-42	69.83	Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot...	[more]
CYPX_USEUD	3.479e-42	68.10	Peptidyl-prolyl cis-trans isomerase OS=Unspecified...	[more]
PPIB_DICDI	5.891e-42	63.48	Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste...	[more]
CYP5_RHIOR	7.690e-42	66.96	Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop...	[more]
PPIA_BLAGE	1.003e-41	66.38	Peptidyl-prolyl cis-trans isomerase OS=Blattella g...	[more]
PPIA_DROME	2.208e-41	66.38	Peptidyl-prolyl cis-trans isomerase OS=Drosophila ...	[more]
PPIA1_RHIOR	6.926e-40	66.38	Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-750 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504261 ID=CF504261; Name=CF504261; organism=Citrus sinensis; type=EST; length=413bp
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAG
CCTCTCCACTACAAAGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACATTT
GTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAGGCCATCGAGAA
AGTGGGGTCCAGC