CF504261 | Citrus Genome Database

Overview


Name	CF504261
Unique Name	CF504261
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	413

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.173e-33
Identity = 67/116 (57.76%), Postives = 76/116 (65.52%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RI MELF+++ PRTAENFRALCTGEKG G       +K S FHRVIP F+CQ            +SIYG KF DENF  KHTGPG+LSMAN G  TN SQF +   K E LD KH+
Sbjct: 3079 RITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHV 3187

HSP 2 Score: 27.7202 bits (60), Expect = 5.173e-33
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG V +GMD VK IE  GS
Sbjct: 3188 VFGFVKDGMDTVKKIESFGS 3207

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.176e-33
Identity = 66/116 (56.90%), Postives = 78/116 (67.24%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RI+MELF+++ P+TAENFRALCTGEKG G       +K S FHRV+P F+CQ            +SIYG KF DENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KH+
Sbjct: 2908 RIIMELFSNIVPQTAENFRALCTGEKGFG-------FKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHV 3016

HSP 2 Score: 26.5646 bits (57), Expect = 5.176e-33
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG V +GMD V+ IE  GS
Sbjct: 3017 VFGFVKDGMDTVRKIESFGS 3036

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.237e-33
Identity = 67/116 (57.76%), Postives = 76/116 (65.52%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RI MELF+++ P+TAENFRALCTGEKG G       +K S FHRVIP F+CQ             SIYG KF DENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KH+
Sbjct:  940 RITMELFSNIVPKTAENFRALCTGEKGFG-------FKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHV 1048

HSP 2 Score: 27.7202 bits (60), Expect = 5.237e-33
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG V +GMD VK IE  GS
Sbjct: 1049 VFGFVKDGMDTVKKIESFGS 1068

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPID_CANAL (Peptidyl-prolyl cis-trans isomerase D OS=Candida albicans GN=CPR6 PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 6.913e-33
Identity = 69/120 (57.50%), Postives = 80/120 (66.67%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVG-KSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXX---ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+V +L+ DV P+TA NFR+LCTG+KG+  KSGKPL YK S FHRVI  FMCQ               ESIYG KF DENF   H  P +LSMAN+GP TNGSQFF+ T  T  LDGKH+
Sbjct:   19 RVVFKLYDDVVPKTAANFRSLCTGDKGISPKSGKPLSYKDSIFHRVIKDFMCQGGDFTAPSDHLGTGGESIYGEKFEDENFKLNHNKPFLLSMANSGPNTNGSQFFITTVPTPHLDGKHV 138

HSP 2 Score: 24.6386 bits (52), Expect = 6.913e-33
Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEK 401
            VFG+V+EG  +V+ +E+
Sbjct:  139 VFGEVIEGKSIVRQLER 155

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.965e-33
Identity = 69/116 (59.48%), Postives = 74/116 (63.79%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            +IVM L+ DV P+T ENFRALCTGE G G       YKGS FHRVI  FM Q            ESIYG KF DENF  KHT P  LSMANAG  TNGSQFF+ T  T WLDGKH+
Sbjct:   47 KIVMGLYGDVVPKTVENFRALCTGETGKG-------YKGSKFHRVIKNFMIQGGDFTRGDGTGGESIYGRKFPDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHV 155

HSP 2 Score: 27.335 bits (59), Expect = 6.965e-33
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIE 398
            VFG+V+EG D+V AIE
Sbjct:  156 VFGEVLEGQDIVDAIE 171

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYPH_ENCCU (Peptidyl-prolyl cis-trans isomerase OS=Encephalitozoon cuniculi GN=CPR1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.004e-33
Identity = 65/116 (56.03%), Postives = 74/116 (63.79%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVM+L  D+ P+TA+NFR LC   KG G       YKGS+FHR+IPGFM Q             SIYG KF DENF  KHT  GILSMAN G  TNGSQFF+   KT+WLD KH+
Sbjct:   22 RIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHV 130

HSP 2 Score: 31.9574 bits (71), Expect = 7.004e-33
Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+VVEGMDVV  I K GS
Sbjct:  131 VFGEVVEGMDVVHKIAKYGS 150

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.112e-33
Identity = 69/117 (58.97%), Postives = 77/117 (65.81%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RI MELFADVTPRTAENFR  CTGE      GKP  YK S FHRVI  FM Q             +IYG+ KFADENFV KH   G+LSMAN+GP TNG QFF+ T  T +L+GKH+
Sbjct:   29 RIKMELFADVTPRTAENFRRFCTGESK-NSQGKPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFADENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHV 144

HSP 2 Score: 29.6462 bits (65), Expect = 9.112e-33
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIE 398
            VFGQVV+GMD+V+ IE
Sbjct:  145 VFGQVVDGMDIVRMIE 160

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.553e-32
Identity = 70/116 (60.34%), Postives = 77/116 (66.38%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVM L ADV P+TAENFR LCT E+G G       YKG SFHRVIP FMCQ            +SIYG KF DENF  KH   G LSMAN+G  TNGSQFF+CT KT+WLD KH+
Sbjct:  154 RIVMLLRADVVPKTAENFRQLCTHEQGYG-------YKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHV 262

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYPH_UROFA (Peptidyl-prolyl cis-trans isomerase OS=Uromyces fabae GN=PIG28 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.018e-32
Identity = 66/116 (56.90%), Postives = 71/116 (61.21%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIV EL+ DV PRT  NFR LC    G G       +K S FHRVIP FM Q            ESIYG KF DENF KKH   G+LSMANAGP TNGSQFF+   KT WLDGKH+
Sbjct:   17 RIVFELYDDVVPRTTNNFRQLCLNPPGKG-------FKHSIFHRVIPDFMIQGGDFTNGNGTGGESIYGKKFEDENFQKKHVERGMLSMANAGPNTNGSQFFITVTKTPWLDGKHV 125

HSP 2 Score: 30.0314 bits (66), Expect = 2.018e-32
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3

Query:  351 VFGQVVEGMD-VVKAIEKVGS 410
            VFG+V+EG D VVKA+EK GS
Sbjct:  126 VFGKVIEGYDQVVKAMEKTGS 146

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.413e-32
Identity = 70/115 (60.87%), Postives = 77/115 (66.96%), Query Frame = 2

Query:    5 IVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            IV+ELFADVTPRTAENFR  CTGE    K G P  YK  +FHRVI  FM Q             SIYGSKF DENF  KH GPG+LSMANAG  TNG QFF+  AKT++LD KH+
Sbjct:   33 IVIELFADVTPRTAENFRQFCTGE--YKKDGVPNGYKNCTFHRVIKDFMIQGGDFCNGDGTGLMSIYGSKFRDENFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHV 145

HSP 2 Score: 23.483 bits (49), Expect = 3.413e-32
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKV 404
            VFG+V++GM  V+ IE V
Sbjct:  146 VFGRVLDGMLTVRKIENV 163

The following BLAST results are available for this feature:

BLAST of CF504261 vs. ExPASy Swiss-Prot

BLAST of CF504261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220


Match Name	E-value	Identity	Description
RBP2_HUMAN	5.173e-33	57.76	E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R...	[more]
RBP2_MOUSE	5.176e-33	56.90	E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R...	[more]
RBP2_BOVIN	5.237e-33	57.76	E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta...	[more]
PPID_CANAL	6.913e-33	57.50	Peptidyl-prolyl cis-trans isomerase D OS=Candida a...	[more]
PPIB_YARLI	6.965e-33	59.48	Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ...	[more]
CYPH_ENCCU	7.004e-33	56.03	Peptidyl-prolyl cis-trans isomerase OS=Encephalito...	[more]
PPIH_ASPFU	9.112e-33	58.97	Peptidyl-prolyl cis-trans isomerase H OS=Aspergill...	[more]
PPIE_DROME	1.553e-32	60.34	Peptidyl-prolyl cis-trans isomerase E OS=Drosophil...	[more]
CYPH_UROFA	2.018e-32	56.90	Peptidyl-prolyl cis-trans isomerase OS=Uromyces fa...	[more]
CYP11_CAEEL	3.413e-32	60.87	Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-750 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504261 ID=CF504261; Name=CF504261; organism=Citrus sinensis; type=EST; length=413bp
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAG
CCTCTCCACTACAAAGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACATTT
GTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAGGCCATCGAGAA
AGTGGGGTCCAGC