CF504264

Overview
NameCF504264
Unique NameCF504264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9350 contig Csv1_Contig9350:47..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_AEDAE (60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 6.499e-53
Identity = 101/156 (64.74%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTG 473
            M FVK  K+K YFKR+QV+++RRREGKTDY AR RLI QDKNKYNTPKYR +VR +N+DI  QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP D     FR  LDVGL +TTTG
Sbjct:    1 MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKYRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYTGCTDVTGEEYLVEPVDDGPGAFRCYLDVGLARTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_MOUSE (60S ribosomal protein L5 OS=Mus musculus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 8.488e-53
Identity = 102/156 (65.38%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTG 473
            M FVK  K+KAYFKR+QV+++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G +Y+VE  D +   F   LD GL +TTTG
Sbjct:    1 MGFVKVVKNKAYFKRYQVRFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGAFTCYLDAGLARTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 1.448e-52
Identity = 100/156 (64.10%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTG 473
            M FVK  K+K YFKR+QV+++RRREGKTDY AR RLI QDKNKYNTPK+R +VR +N+DI  QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP D     FR  LDVGL +TTTG
Sbjct:    1 MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.891e-52
Identity = 101/156 (64.74%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTG 473
            M FVK  K+K YFKRFQVKYKRRREGKTDY AR RL  QDK+KYNTPKYR +VR +NKDI  QI  + I GD ++ AAY+HELP+YG++VGLTNYAAAYCTGLLLARR+LK L++D  Y G  E  G++Y+VE  D     FR  LD GL++TTTG
Sbjct:    1 MGFVKVVKNKQYFKRFQVKYKRRREGKTDYYARKRLTVQDKSKYNTPKYRLIVRLSNKDITCQIAYSRIEGDRIVCAAYSHELPKYGIKVGLTNYAAAYCTGLLLARRLLKQLKLDTLYTGTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.891e-52
Identity = 99/156 (63.46%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTG 473
            M FVK  K+K YFKR+QVK+KRRREGKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q+  + I GD ++ AAY+HELPRYG++VGLTNYAAAY TGLLLARR+L+ L +D  Y G  + TG++Y+VEP D     FR  LDVGL +TTTG
Sbjct:    1 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGLLLARRLLQRLGLDTLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 7.185e-52
Identity = 98/156 (62.82%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTG 473
            M +VK  K+  YF R+QVKY+RRR+GKTDYRAR+RL+ QDKNKYNT KYR VVRF+NK++  QIV + I GD V+AAAY+ ELP YGL+VGLTNY+AAYC GLL+ARR+L  L + D Y+G  E  GEDY+VEP  D  +PF  LLD GL +T+TG
Sbjct:    1 MGYVKVVKTSPYFSRYQVKYRRRRQGKTDYRARLRLVRQDKNKYNTHKYRLVVRFSNKNVTCQIVYSTIQGDVVMAAAYSKELPNYGLKVGLTNYSAAYCVGLLVARRILTKLNLADTYKGQEEPDGEDYNVEPVEDGPKPFYCLLDTGLKRTSTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.601e-51
Identity = 105/159 (66.04%), Postives = 121/159 (76.10%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT----RRPFRALLDVGLIKTTTG 473
            MAF K  K+ AY+ RFQ KYKRRREGKTDY AR RLI Q KNKYN PKYR VVRFTN+DII QIVS+ I GD V A+AY+HEL  YG+E GLTN+AAAY TGLLLARRVLK L +D+ ++G  EA GE    E A+T    RRPF+A LDVGL +T+TG
Sbjct:    1 MAFHKLVKNSAYYSRFQTKYKRRREGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDIILQIVSSEITGDKVFASAYSHELKAYGIEHGLTNWAAAYATGLLLARRVLKKLGLDETFKGVEEADGEYKLTEAAETDDGERRPFKAFLDVGLARTSTG 159          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_THEPA (60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.091e-51
Identity = 101/156 (64.74%), Postives = 124/156 (79.49%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTG 473
            M F++  K+KAYF+RFQVK++RRREGKTDY AR RL+ QDKNKY++PKYR VVR TNK +I QIVS+ +VGD V A+A + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D ++ G VEA GE Y VE  D  RRPF+ALLDVG+   TTG
Sbjct:    1 MTFLRVVKNKAYFRRFQVKFRRRREGKTDYYARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEEDNERRPFKALLDVGIKNVTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.730e-51
Identity = 101/156 (64.74%), Postives = 124/156 (79.49%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTG 473
            M F++  K+KAYF+RFQVK++RRREGKTDY AR RL+ QDKNKY++PKYR VVR TNK +I QIVS+ +VGD V A+A + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D ++ G VEA GE Y VE  D  RRPF+ALLDVG+   TTG
Sbjct:    1 MTFLRVVKNKAYFRRFQVKFRRRREGKTDYYARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEDDNERRPFKALLDVGIKNVTTG 156          
BLAST of CF504264 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.038e-50
Identity = 97/156 (62.18%), Postives = 124/156 (79.49%), Query Frame = 3
Query:    9 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTG 473
            M FVK  K+KAY+ R+QV+++RRREGKTDY+ R RLI QDKNKYN+PKYR V R TN D+IAQ+V + IVGD VL AAYAHELPR+G++VGLTNYA+ Y TGLLLARR+L  L++ D Y+G  +  G+ + V+P D + RPF+A LDVGL +T+TG
Sbjct:    1 MGFVKVVKTKAYYSRYQVQFRRRREGKTDYQQRHRLITQDKNKYNSPKYRLVARITNTDVIAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTG 156          
The following BLAST results are available for this feature:
BLAST of CF504264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL5_AEDAE6.499e-5364.7460S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 ... [more]
RL5_MOUSE8.488e-5365.3860S ribosomal protein L5 OS=Mus musculus GN=Rpl5 P... [more]
RL5_ANOGA1.448e-5264.1060S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_LYSTE1.891e-5264.7460S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_BOMMO1.891e-5263.4660S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_DUNSA7.185e-5262.8260S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]
RL5_NEUCR1.601e-5166.0460S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_THEPA2.091e-5164.7460S ribosomal protein L5 OS=Theileria parva GN=RPL... [more]
RL5_THEAN2.730e-5164.7460S ribosomal protein L5 OS=Theileria annulata GN=... [more]
RL5_DICDI1.038e-5062.1860S ribosomal protein L5 OS=Dictyostelium discoide... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-753 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504264 ID=CF504264; Name=CF504264; organism=Citrus sinensis; type=EST; length=475bp
TTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAG
CGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAG
AGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACAACACACCCA
AGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGATA
GTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCA
TGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAG
CTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAA
ATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTACTC
TGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTTG
GGCTCATCAAAACAACAACTGGAAA
back to top