CF504267

Overview
NameCF504267
Unique NameCF504267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_STAES (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.718e-20
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   31 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRDE 450
            I+GAQ     G+AF  K      V     GDG ++QG  +E +N A+ +  PAI V +NN+Y + T  ++  AA++ +       +PG++VDGMDALAV QA   A+E A+   GP ++E  TYRY  H+M+ D  + YRT DE
Sbjct:  145 IIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQGDFYEGINFASAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDE 288          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_STAEQ (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.718e-20
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   31 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRDE 450
            I+GAQ     G+AF  K      V     GDG ++QG  +E +N A+ +  PAI V +NN+Y + T  ++  AA++ +       +PG++VDGMDALAV QA   A+E A+   GP ++E  TYRY  H+M+ D  + YRT DE
Sbjct:  145 IIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQGDFYEGINFASAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDE 288          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODBA_BACSU (2-oxoisovalerate dehydrogenase subunit alpha OS=Bacillus subtilis GN=bfmBAA PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.113e-19
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 1
Query:   22 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA--EWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 453
            G   V  Q+P   G+A A +  K +   F  +G+G++NQG   E  N AA+  LP I +CENN Y +     +  A ++ S    G  +PG+ V+G D L V QA K A+E A +  GP ++E  +YR   HS  D  S+YR R+E+
Sbjct:  121 GSSPVTTQVPHAVGIALAGRMEKKDIAAFVTFGEGSSNQGDFHEGANFAAVHKLPVIFMCENNKYAISVPYDKQVACENISDRAIGYGMPGVTVNGNDPLEVYQAVKEARERARRGEGPTLIETISYRLTPHSSDDDDSSYRGREEV 267          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_BACCE (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus cereus GN=pdhA PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.899e-19
Identity = 56/143 (39.16%), Postives = 81/143 (56.64%), Query Frame = 1
Query:   31 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRD 447
            I+GAQI    G+A   K    ++V     GDG A+QG  +E +N A  +  PAI V +NN Y + T   +  AAK+ +       + G++VDGMD LAV  A  FA+E A+   GP ++E  T+RY  H+M+ D  + YRT+D
Sbjct:  146 IIGAQIIQTAGVALGMKLRGKKSVAITYTGDGGASQGDFYEGMNFAGAFKAPAIFVVQNNRYAISTPVEKQSAAKTVAQKAVAAGIYGIQVDGMDPLAVYAATAFARERAVNGEGPTLIETLTFRYGPHTMAGDDPTRYRTKD 288          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODBA_THET2 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.231e-18
Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 1
Query:   34 VGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 456
            + + +P   G A + K  +   V    +GDGA ++G  +  +N AA+   PA+ VCENN Y +         SP+   +     +PG  VDGMD LA     K A E A +  GP ++E+  YRY  HS +D  S YR ++E++
Sbjct:  146 IASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFVCENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVA 289          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODPA_ACHLA (Pyruvate dehydrogenase E1 component subunit alpha (Fragment) OS=Acholeplasma laidlawii GN=pdhA PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.608e-18
Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 1
Query:   31 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRDE 450
            I+G+Q  +  GLA A K  K   VT    GDG    G+ +E LN AA +  P + V +NN + + T   +A+ S +  ++G    +P ++VDG D LA+  A K A + A K +GP ++E  TYR   H+ S DP S YRT++E
Sbjct:  117 IIGSQSNIAAGLAMASKIRKTNEVTAFTIGDGGTAHGEFYEGLNFAASFKAPVVAVIQNNQWAISTPVRKASNSETLAQKGVAFGIPYIQVDGNDMLAMYVASKEAMDRARKGDGPTLIEAFTYRMGPHTTSDDPCSIYRTKEE 260          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODBA_THET8 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.778e-17
Identity = 47/144 (32.64%), Postives = 73/144 (50.69%), Query Frame = 1
Query:   34 VGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 456
            + + +P   G A + K  +   V    +GDGA ++G  +  +N AA+   PA+ + ENN Y +         SP+   +     +PG  VDGMD LA     K A E A +  GP ++E+  YRY  HS +D  S YR ++E++
Sbjct:  146 IASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVA 289          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.960e-17
Identity = 52/149 (34.90%), Postives = 74/149 (49.66%), Query Frame = 1
Query:   34 VGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT-------AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL-KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 456
            +  QIP   G A+A K +    V    +G+GAA++G      N AA  + P I  C NN Y + T        +  AA+ P Y      +  ++VDG D  AV  A K A+  A+ +N P ++E  TYR   HS SD  S YR+ DE++
Sbjct:  209 LATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVN 352          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.960e-17
Identity = 51/149 (34.23%), Postives = 74/149 (49.66%), Query Frame = 1
Query:   34 VGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT-------AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL-KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 456
            +  QIP   G A+A K +    +    +G+GAA++G      N AA  + P I  C NN Y + T        +  AA+ P Y      +  ++VDG D  AV  A K A+  A+ +N P ++E  TYR   HS SD  S YR+ DE++
Sbjct:  206 LATQIPQAVGAAYAAKRANANRIVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY-----GIKSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVN 349          
BLAST of CF504267 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.960e-17
Identity = 52/149 (34.90%), Postives = 74/149 (49.66%), Query Frame = 1
Query:   34 VGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT-------AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL-KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 456
            +  QIP   G A+A K +    V    +G+GAA++G      N AA  + P I  C NN Y + T        +  AA+ P Y      +  ++VDG D  AV  A K A+  A+ +N P ++E  TYR   HS SD  S YR+ DE++
Sbjct:  209 LATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVN 352          
The following BLAST results are available for this feature:
BLAST of CF504267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPA_STAES1.718e-2040.28Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAEQ1.718e-2040.28Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_BACSU1.113e-1937.412-oxoisovalerate dehydrogenase subunit alpha OS=Ba... [more]
ODPA_BACCE1.899e-1939.16Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_THET21.231e-1834.032-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODPA_ACHLA1.608e-1838.19Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_THET81.778e-1732.642-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODBA_PANTR3.960e-1734.902-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MOUSE3.960e-1734.232-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MACFA3.960e-1734.902-oxoisovalerate dehydrogenase subunit alpha, mito... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-756 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504267 ID=CF504267; Name=CF504267; organism=Citrus sinensis; type=EST; length=456bp
AAGGACTCCGGCTTTTACGGAGGCCACGGGATTGTTGGGGCTCAGATTCC
TTTAGGCTGTGGATTGGCTTTCGCGCAGAAGTACTCGAAGGATGAAACGG
TGACGTTTGCACTGTATGGAGACGGTGCAGCAAACCAGGGCCAGTTGTTC
GAGGCTCTCAATATAGCAGCGCTTTGGGATCTGCCGGCGATTTTGGTCTG
CGAGAATAATCACTATGGAATGGGGACAGCTGAGTGGAGAGCCGCAAAGA
GTCCCTCATACTACAAGCGTGGGGATTATGTTCCCGGTTTGAAGGTGGAT
GGCATGGATGCCCTTGCTGTCAAACAAGCATGCAAGTTTGCTAAGGAGCA
TGCCTTAAAGAATGGACCTATGATACTTGAAATGGACACATACAGGTATC
ATGGTCACTCCATGTCTGACCCTGGAAGCACCTACCGTACTCGTGATGAG
ATCAGT
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