CF504269

Overview
NameCF504269
Unique NameCF504269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:763..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_PERFR (Chalcone synthase OS=Perilla frutescens GN=CHS PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.147e-50
Identity = 97/119 (81.51%), Postives = 102/119 (85.71%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            QLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE+          +TR VL EYGNMSSACVLFILDEMRK S +E
Sbjct:  238 QLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPLGISDWNSVFWIAHPGGPAILDQVEAKLGLKPEKLRSTRHVLGEYGNMSSACVLFILDEMRKSSAKE 356
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.147e-50
Identity = 97/119 (81.51%), Postives = 103/119 (86.55%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            ++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS ++
Sbjct:  243 EMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLEEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRKKSAQD 361
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS1_CASGL (Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.147e-50
Identity = 97/119 (81.51%), Postives = 104/119 (87.39%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            ++VST+QTILPDSDGAIDGHLREVG+TFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMR+KS E+
Sbjct:  238 EVVSTAQTILPDSDGAIDGHLREVGVTFHLLKDVPGLISKNIEKSLVEAFQPLGISDWNSLFWIAHPGGPAILDQVEEKLALKPEKLGATRHVLSEYGNMSSACVLFILDEMRRKSAEK 356
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS1_CAMSI (Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.147e-50
Identity = 98/119 (82.35%), Postives = 103/119 (86.55%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            +LVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL+EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS  +
Sbjct:  238 ELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLAEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAAD 356
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_HYPAN (Chalcone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.804e-50
Identity = 96/119 (80.67%), Postives = 105/119 (88.24%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            +LVS +QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKN+EKSL+EAF PLGISDWNS+FWIAHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMR+KS E+
Sbjct:  238 ELVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLSLKPEKLRATRHVLSEYGNMSSACVLFILDEMRRKSKED 356
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_ARAAL (Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.804e-50
Identity = 97/119 (81.51%), Postives = 103/119 (86.55%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            ++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS ++
Sbjct:  240 EMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRKKSAKD 358
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.662e-50
Identity = 95/119 (79.83%), Postives = 104/119 (87.39%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF PLGISDWNSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+
Sbjct:  241 QMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAED 359
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.662e-50
Identity = 95/119 (79.83%), Postives = 104/119 (87.39%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF PLGISDWNSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+
Sbjct:  241 QMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAED 359
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS7_SORBI (Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.783e-50
Identity = 97/121 (80.17%), Postives = 105/121 (86.78%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S EE +
Sbjct:  242 QLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEEGQ 362
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS3_SINAL (Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.159e-50
Identity = 96/119 (80.67%), Postives = 102/119 (85.71%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            ++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILD VE           ATR VLSEYGNMSSACVLFILDEMR+KS E+
Sbjct:  244 EMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDDVEKKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRRKSKED 362
The following BLAST results are available for this feature:
BLAST of CF504269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSY_PERFR2.147e-5081.51Chalcone synthase OS=Perilla frutescens GN=CHS PE=... [more]
CHSY_MATIN2.147e-5081.51Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHS1_CASGL2.147e-5081.51Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2... [more]
CHS1_CAMSI2.147e-5082.35Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 P... [more]
CHSY_HYPAN2.804e-5080.67Chalcone synthase OS=Hypericum androsaemum PE=1 SV... [more]
CHSY_ARAAL2.804e-5081.51Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=... [more]
CHSY_ORYSJ3.662e-5079.83Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI3.662e-5079.83Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHS7_SORBI4.783e-5080.17Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=... [more]
CHS3_SINAL8.159e-5080.67Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-758 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504269 ID=CF504269; Name=CF504269; organism=Citrus sinensis; type=EST; length=365bp
ATCAGCTCGTGTCGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCA
ATTGACGGACACTTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGA
CGTCCCCGGCTTGATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGT
TCGCCCCGCTTGGCATCAGCGACTGGAACTCGATATTCTGGATCGCTCAC
CCCGGTGGGCCCGCAATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAA
AGGGGAGAAGCTGAAGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACA
TGTCAAGCGCTTGTGTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GTTGAGGAAGCGAAA
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