CF504269

Overview
NameCF504269
Unique NameCF504269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:763..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS2_SORBI (Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.159e-50
Identity = 96/121 (79.34%), Postives = 105/121 (86.78%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ +
Sbjct:  242 QLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGR 362
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.066e-49
Identity = 94/119 (78.99%), Postives = 105/119 (88.24%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            +LVS +QT+LPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL+EA  P+GISDWNS+FWIAHPGGPAILDQVE+          ATRQVLS+YGNMSSACVLFILDE+R+KS E+
Sbjct:   81 ELVSAAQTVLPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLNEALKPIGISDWNSLFWIAHPGGPAILDQVEAKLALKPEKLEATRQVLSDYGNMSSACVLFILDEVRRKSAEK 199
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS6_SORBI (Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.066e-49
Identity = 96/121 (79.34%), Postives = 105/121 (86.78%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ +
Sbjct:  242 QLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQ 362
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS5_SORBI (Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.066e-49
Identity = 96/121 (79.34%), Postives = 105/121 (86.78%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ +
Sbjct:  242 QLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQ 362
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.066e-49
Identity = 96/121 (79.34%), Postives = 105/121 (86.78%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ +
Sbjct:  242 QLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQ 362
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS3_SORBI (Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.066e-49
Identity = 96/121 (79.34%), Postives = 105/121 (86.78%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAK 365
            QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ +
Sbjct:  242 QLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERLRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQ 362
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_RAPSA (Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.392e-49
Identity = 94/119 (78.99%), Postives = 103/119 (86.55%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            ++VS +QTILPDSDGAIDGHLREVG+TFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILD VE           ATR VLSEYGNMSSACVLFILDEMR+KS+++
Sbjct:  243 EMVSAAQTILPDSDGAIDGHLREVGITFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDDVEKKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRRKSLDD 361
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.818e-49
Identity = 95/119 (79.83%), Postives = 102/119 (85.71%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            ++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR V+ EYGNMSSACVLFILDEMRKKS ++
Sbjct:  244 EMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKEEKMRATRHVMREYGNMSSACVLFILDEMRKKSAKD 362
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 1.818e-49
Identity = 93/119 (78.15%), Postives = 105/119 (88.24%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            +++S +QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEK+L++AF+PLGI+DWNSIFWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFI+DEMRKKS E+
Sbjct:  241 EMISAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALTQAFSPLGITDWNSIFWIAHPGGPAILDQVELKLGLKEEKMRATRHVLSEYGNMSSACVLFIIDEMRKKSAED 359
[Close]
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_ANTMA (Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.818e-49
Identity = 95/119 (79.83%), Postives = 102/119 (85.71%), Query Frame = 3 
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            Q+V+ +QT+LPDS GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           +TRQVLSEYGNMSSACVLFILDEMRK S +E
Sbjct:  238 QIVTAAQTLLPDSHGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFDPLGISDWNSVFWIAHPGGPAILDQVEEKLGLKPEKLRSTRQVLSEYGNMSSACVLFILDEMRKSSAKE 356
The following BLAST results are available for this feature:
BLAST of CF504269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS2_SORBI8.159e-5079.34Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=... [more]
CHSY_MALDO1.066e-4978.99Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
CHS6_SORBI1.066e-4979.34Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=... [more]
CHS5_SORBI1.066e-4979.34Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=... [more]
CHS4_SORBI1.066e-4979.34Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
CHS3_SORBI1.066e-4979.34Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=... [more]
CHSY_RAPSA1.392e-4978.99Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 ... [more]
CHSY_CARAN1.818e-4979.83Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHSY_CALCH1.818e-4978.15Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]
CHSY_ANTMA1.818e-4979.83Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-758 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504269 ID=CF504269; Name=CF504269; organism=Citrus sinensis; type=EST; length=365bp
ATCAGCTCGTGTCGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCA
ATTGACGGACACTTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGA
CGTCCCCGGCTTGATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGT
TCGCCCCGCTTGGCATCAGCGACTGGAACTCGATATTCTGGATCGCTCAC
CCCGGTGGGCCCGCAATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAA
AGGGGAGAAGCTGAAGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACA
TGTCAAGCGCTTGTGTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GTTGAGGAAGCGAAA
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