CF504269

Overview
NameCF504269
Unique NameCF504269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:763..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSB_SOLTU (Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.539e-48
Identity = 94/119 (78.99%), Postives = 102/119 (85.71%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            +LVS +QT++PDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR+VLS YGNMSSACVLFILDEMRK S +E
Sbjct:  238 ELVSAAQTLVPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKQEKLRATREVLSNYGNMSSACVLFILDEMRKASTKE 356          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS3_SOYBN (Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.539e-48
Identity = 96/118 (81.36%), Postives = 103/118 (87.29%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVE 356
            QLV T+QTILPDS+GAIDGHL EVGLTFHLLKDVPGLISKNIEK+L EAF PLGISD+NSIFWIAHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILD+MRKKS+E
Sbjct:  237 QLVWTAQTILPDSEGAIDGHLGEVGLTFHLLKDVPGLISKNIEKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIE 354          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS1_SOLLC (Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS1 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 1.539e-48
Identity = 94/119 (78.99%), Postives = 102/119 (85.71%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            +LVS +QT++PDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR+VLS YGNMSSACVLFILDEMRK S +E
Sbjct:  238 ELVSAAQTLVPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKPEKLRATREVLSNYGNMSSACVLFILDEMRKASTKE 356          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSA_SOLTU (Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.010e-48
Identity = 94/119 (78.99%), Postives = 101/119 (84.87%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            +LVS +QT++PDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR+VLS YGNMSSACVLFILDEMRK S  E
Sbjct:  238 ELVSAAQTLVPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKQEKLRATREVLSNYGNMSSACVLFILDEMRKASTNE 356          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.625e-48
Identity = 96/117 (82.05%), Postives = 101/117 (86.32%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVE-SXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKS 350
            +LVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GI+DWNSIFWIAHPGGPAILDQVE            ATR +LSEYGNMSSACVLFILDEMRKKS
Sbjct:  241 ELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLIEAFKPIGINDWNSIFWIAHPGGPAILDQVEHKLAPGRRANSRATRHILSEYGNMSSACVLFILDEMRKKS 357          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS6_SOYBN (Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.428e-48
Identity = 94/118 (79.66%), Postives = 103/118 (87.29%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVE 356
            +LV T+QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNI+K+L EAF PLGI D+NSIFWIAHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILD+MRKKS+E
Sbjct:  237 ELVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIQKALVEAFQPLGIDDYNSIFWIAHPGGPAILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIE 354          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS9_DAUCA (Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.477e-48
Identity = 93/119 (78.15%), Postives = 101/119 (84.87%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            ++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNI KSL EAF PLGISDWNSIFWIAHPGGPAILDQVE+          +TRQVL +YGNMSSACVLFILDEMR  S ++
Sbjct:  238 EIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIRKSLVEAFKPLGISDWNSIFWIAHPGGPAILDQVETELSLKPDKLKSTRQVLRDYGNMSSACVLFILDEMRNASAKD 356          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHSY_CATRO (Chalcone synthase OS=Catharanthus roseus GN=CHS PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.847e-48
Identity = 94/119 (78.99%), Postives = 99/119 (83.19%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            +LVS +QT+LPDS GAIDGHLREVGLTFHLLKDVPGLISKNI K+L EAF PLGISDWNSIFWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRK S  +
Sbjct:  238 ELVSAAQTLLPDSHGAIDGHLREVGLTFHLLKDVPGLISKNIGKALDEAFQPLGISDWNSIFWIAHPGGPAILDQVEEKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASARD 356          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS2_SOYBN (Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 9.973e-48
Identity = 96/118 (81.36%), Postives = 103/118 (87.29%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVE 356
            QLV T+QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEK+L EAF PLGISD+NSIF IAHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILD+MRKKS+E
Sbjct:  237 QLVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALVEAFQPLGISDYNSIFRIAHPGGPAILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIE 354          
BLAST of CF504269 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.303e-47
Identity = 92/119 (77.31%), Postives = 100/119 (84.03%), Query Frame = 3
Query:    3 QLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 359
            QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L EAF PLGI  WNS+FWIAH GGPAILD VE+          ATR VLSEYGNMSSACVLFI+DEMRK+S E+
Sbjct:  241 QLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALEEAFKPLGIDHWNSVFWIAHQGGPAILDMVEAKVNLNKERMRATRHVLSEYGNMSSACVLFIMDEMRKRSAED 359          
The following BLAST results are available for this feature:
BLAST of CF504269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSB_SOLTU1.539e-4878.99Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B... [more]
CHS3_SOYBN1.539e-4881.36Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV... [more]
CHS1_SOLLC1.539e-4878.99Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS... [more]
CHSA_SOLTU2.010e-4878.99Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A... [more]
CHSY_CHRAE2.625e-4882.05Chalcone synthase OS=Chrysosplenium americanum GN=... [more]
CHS6_SOYBN3.428e-4879.66Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV... [more]
CHS9_DAUCA4.477e-4878.15Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 ... [more]
CHSY_CATRO5.847e-4878.99Chalcone synthase OS=Catharanthus roseus GN=CHS PE... [more]
CHS2_SOYBN9.973e-4881.36Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV... [more]
CHS1_HORVU1.303e-4777.31Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-758 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504269 ID=CF504269; Name=CF504269; organism=Citrus sinensis; type=EST; length=365bp
ATCAGCTCGTGTCGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCA
ATTGACGGACACTTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGA
CGTCCCCGGCTTGATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGT
TCGCCCCGCTTGGCATCAGCGACTGGAACTCGATATTCTGGATCGCTCAC
CCCGGTGGGCCCGCAATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAA
AGGGGAGAAGCTGAAGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACA
TGTCAAGCGCTTGTGTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GTTGAGGAAGCGAAA
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