CF504271

Overview
NameCF504271
Unique NameCF504271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length190
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:472..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.425e-11
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 3
Query:    3 EIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            E ++A+EA   AG   GFFEL+PKEGLALVNGTAVGSG+ASMVLFEAN
Sbjct:  226 ESLNAKEAFHLAGVDGGFFELKPKEGLALVNGTAVGSGVASMVLFEAN 273          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.473e-11
Identity = 37/48 (77.08%), Postives = 38/48 (79.17%), Query Frame = 3
Query:    3 EIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            E + A EA   AG   GFFELQPKEGLALVNGTAVGSGLASMVLFE N
Sbjct:   84 ETMAAAEAFTLAGINGGFFELQPKEGLALVNGTAVGSGLASMVLFETN 131          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PAL2_SOLTU (Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanum tuberosum GN=PAL-2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.842e-11
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 3
Query:    9 IDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            +DA+EA + AG   GFFELQPKEGLALVNGTAVGS +AS+VLFE+N
Sbjct:  239 LDAEEAFRVAGVTGGFFELQPKEGLALVNGTAVGSAMASIVLFESN 284          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.842e-11
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 3
Query:    3 EIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            E +   E  K AG   GFFELQPKEGLALVNGTAVGSG+ASMVLF+AN
Sbjct:  224 ETLSPAEGFKLAGIDGGFFELQPKEGLALVNGTAVGSGMASMVLFDAN 271          
BLAST of CF504271 vs. ExPASy Swiss-Prot
Match: PAL4_ARATH (Phenylalanine ammonia-lyase 4 OS=Arabidopsis thaliana GN=PAL4 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.630e-11
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 3
Query:    3 EIIDAQEASKQAGFG-FFELQPKEGLALVNGTAVGSGLASMVLFEAN 140
            E + A EA K AG   FFELQPKEGLALVNGTAVGSGLAS VLF+AN
Sbjct:  222 ETLTASEAFKLAGVSSFFELQPKEGLALVNGTAVGSGLASTVLFDAN 268          
The following BLAST results are available for this feature:
BLAST of CF504271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PAL3_PHAVU3.425e-1175.00Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL4_POPKI4.473e-1177.08Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]
PAL2_SOLTU5.842e-1173.91Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanu... [more]
PAL1_RUBID5.842e-1172.92Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
PAL4_ARATH7.630e-1176.60Phenylalanine ammonia-lyase 4 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-760 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504271 ID=CF504271; Name=CF504271; organism=Citrus sinensis; type=EST; length=190bp
GAGAGATCATTGATGCCCAGGAAGCCTCTAAACAAGCGGGTTTCGGGTTC
TTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTTGTCAATGGCACTGCTGT
TGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGAGGCTAACAACCCTTGCC
TCTGTTATCAGAAATTTTGTCAGCCTATTTTTGCCTGAAG
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