CF504274

Overview
NameCF504274
Unique NameCF504274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12236 contig Csv1_Contig12236:18..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504274 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 47/174 (27.01%), Postives = 80/174 (45.98%), Query Frame = 1
Query:  190 CNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPE-------------------------ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDG 636
            C++ G+ C+    FV  + LS+  + G      I  L+ L K+ L  N  +G I   L NC  L+++DL +N F+G+ P+                         + S+  L+ +Y   +G +G  P  ++GNM+ L +L + DN F   P P  +  +  L  LYL + ++ G
Sbjct:   57 CSWLGVECDR-RQFVDTLNLSSYGISGEFG-PEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIP-SNIGNMSELTTLWLDDNQFS-GPVPSSLGNITTLQELYLNDNNLVG 226          
BLAST of CF504274 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 52/169 (30.77%), Postives = 76/169 (44.97%), Query Frame = 1
Query:   85 TCINSDELQILLNLKTXXXXXXXXXXXXXXXNNHF--CNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPE-ISSLNELQHLYLNLSGFSGVFP------------WMSLGNMTNLVSLSVGD 546
            +C+NSD L +L  LK                 +    CN+ GITC+ DS  V  +  +   + G L    I +L++L  L L  N+  G I   L NC KL  LDL  N FS   P+ + SL  L+ LYL ++  +G  P            ++   N+T  +  S+GD
Sbjct:   27 SCLNSDGLTLLSLLKHLDRVPPQVTSTWKINASEATPCNWFGITCD-DSKNVASLNFTRSRVSGQLG-PEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTGELPESLFRIPKLQVLYLDYNNLTGPIPQSIGD 193          
BLAST of CF504274 vs. ExPASy Swiss-Prot
Match: BRI1_SOLPE (Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 47/146 (32.19%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  193 NFTGITCNS--DSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPE---ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYL 615
            NF+G+   S  + S ++ +++SN N  G LP D++ +L  +  + L FN   G +    +N  KL+ LD+ +N  +G  P       +N L+ LYL  + F G  P  SL N + LVSL +  N +     P  +  L+KL  L L
Sbjct:  339 NFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIP-DSLSNCSQLVSLDLSFN-YLTGSIPSSLGSLSKLKDLIL 482          
The following BLAST results are available for this feature:
BLAST of CF504274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RPK1_IPONI7.068e-1127.01Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
PEPR1_ARATH7.068e-1130.77Leucine-rich repeat receptor-like protein kinase P... [more]
BRI1_SOLPE9.231e-1132.19Systemin receptor SR160 OS=Solanum peruvianum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-763 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504274 ID=CF504274; Name=CF504274; organism=Citrus sinensis; type=EST; length=636bp
ATTTAGTATCATCTTTTTCTTTGGCCAGCAGAAATGTCAACCTCTAAGAT
TTCTCTGTGTCTCCTCCTTTGTCTCCCCTTCTTCACCTGTATCAATTCAG
ATGAGCTTCAGATTCTTCTAAATCTCAAAACCTCCCTCAAAGATTCGAAA
TCCAGTATATTCTCTTCCTGGGTATCAAATAATCACTTTTGTAATTTCAC
CGGAATCACTTGTAACTCGGACAGTTCTTTTGTTCAAGAAATCGAGCTTT
CCAATCGAAACCTGAAAGGAACCCTTCCTTTTGACTCAATTTGTCAGCTT
CAGGCATTGCACAAGCTCTCACTTGGCTTCAATTCCTTGTACGGTGAAAT
CTCAAAAGACTTGAACAACTGTGTCAAACTACAGTACTTGGATCTTGGCA
ACAACGTTTTTAGTGGATCGTTTCCGGAAATATCTTCTCTCAACGAATTA
CAGCACCTGTATCTCAACCTCAGCGGATTCTCCGGCGTGTTTCCATGGAT
GTCGCTTGGAAACATGACCAATCTTGTTTCACTCAGCGTTGGCGATAACC
CTTTTGATCCCACCCCGTTTCCCGACCAAGTCGTGAAGCTGAACAAGCTG
AATTGGCTCTATTTAACAAACTGCTCCATTGATGGG
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