CF504285

Overview
NameCF504285
Unique NameCF504285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_HUMAN (S-adenosylmethionine synthetase isoform type-1 OS=Homo sapiens GN=MAT1A PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.599e-20
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+CDQ+SDAVLDA L QDP++KVACET  KT MV++ GEIT+ A VDY+++VRDT + IG+  +  G D
Sbjct:   31 DKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGFD 100          

HSP 2 Score: 25.7942 bits (55), Expect = 4.599e-20
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            F+FTSESV EGH
Sbjct:   18 FMFTSESVGEGH 29          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_RAT (S-adenosylmethionine synthetase isoform type-1 OS=Rattus norvegicus GN=Mat1a PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.981e-20
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+CDQ+SDAVLDA L QDP++KVACET  KT MV++ GEIT+ A +DY+++VRDT + IG+  +  G D
Sbjct:   32 DKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMIDYQRVVRDTIKHIGYDDSAKGFD 101          

HSP 2 Score: 25.7942 bits (55), Expect = 5.981e-20
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            F+FTSESV EGH
Sbjct:   19 FMFTSESVGEGH 30          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_MOUSE (S-adenosylmethionine synthetase isoform type-1 OS=Mus musculus GN=Mat1a PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.981e-20
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+CDQ+SDAVLDA L QDP++KVACET  KT MV++ GEIT+ A VDY+++VRDT + IG+  +  G D
Sbjct:   32 DKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSVAMVDYQRVVRDTIKHIGYDDSAKGFD 101          

HSP 2 Score: 25.7942 bits (55), Expect = 5.981e-20
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            F+FTSESV EGH
Sbjct:   19 FMFTSESVGEGH 30          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_CLOBB (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=metK PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.982e-20
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+CDQ+SDA+LDA L +DP+++VACETCT T +VMV GEI+T   VD  K+VR+T R IG+  A  G D
Sbjct:   16 DKMCDQISDAILDAILTKDPNARVACETCTTTGLVMVMGEISTNCYVDIPKVVRETVREIGYDRAKYGFD 85          

HSP 2 Score: 24.2534 bits (51), Expect = 5.982e-20
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    4 LFTSESVTEGH 14          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_PROMT (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL2A) GN=metK PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.774e-20
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSA-DVGLDA 390
            DK+CDQVSDAVLDACL++DP S+VACE    T + ++ GEIT+KA VD+ K+VR+  ++IG+ SA D G DA
Sbjct:   17 DKICDQVSDAVLDACLSEDPTSRVACEAVVNTGLCLITGEITSKAEVDFNKLVREVIKNIGYRSASDGGFDA 88          

HSP 2 Score: 25.7942 bits (55), Expect = 7.774e-20
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M  ++FTSESV EGH
Sbjct:    1 MSRYVFTSESVTEGH 15          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_GEOSW (S-adenosylmethionine synthetase OS=Geobacillus sp. (strain WCH70) GN=metK PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.011e-19
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+CDQ+SDA+LDA L +DP+++VACET   T +V+V GEITT   VD  KIVRDT R IG+T A  G DA
Sbjct:   19 DKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPKIVRDTVREIGYTRAKYGFDA 89          

HSP 2 Score: 24.2534 bits (51), Expect = 1.011e-19
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_CLOPH (S-adenosylmethionine synthetase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=metK PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.012e-19
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+CDQ+SDAVLDA L QDP S+VACET   T +V+V GEITT   VD +KIVRDT + IG+  A  G DA
Sbjct:   18 DKICDQISDAVLDALLEQDPMSRVACETAITTGLVLVMGEITTSGYVDIQKIVRDTVKEIGYDRAKYGFDA 88          

HSP 2 Score: 24.2534 bits (51), Expect = 1.012e-19
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    6 LFTSESVTEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_GEOSM (S-adenosylmethionine synthetase OS=Geobacter sp. (strain M21) GN=metK PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.012e-19
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L QDP S+VACET   T M ++ GEITT A +DY KIVR+T R IG+  + +G D
Sbjct:   19 DKVADQVSDAILDAILTQDPKSRVACETMVTTGMAVIAGEITTNAIIDYPKIVRETIREIGYNDSAMGFD 88          

HSP 2 Score: 28.1054 bits (61), Expect = 1.012e-19
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M+ F+FTSESV+EGH
Sbjct:    3 MKDFIFTSESVSEGH 17          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_METFK (S-adenosylmethionine synthetase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=metK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.012e-19
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SD++LDA L QDP ++VA ET T T +V++ GEITT ANVDY KI RDT + IG+ +AD G+D
Sbjct:   17 DKVADQISDSILDAILEQDPTARVAAETLTNTGLVVLAGEITTTANVDYIKIARDTIKRIGYDNADYGID 86          

HSP 2 Score: 27.335 bits (59), Expect = 1.012e-19
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M  +LFTSESV+EGH
Sbjct:    1 MSEYLFTSESVSEGH 15          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_PSYIN (S-adenosylmethionine synthetase OS=Psychromonas ingrahamii (strain 37) GN=metK PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.012e-19
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDAVLDA L QD  ++VACET  KT MVMV GEITT A VD E+I R+T R+IG+TS+++G DA
Sbjct:   17 DKIADQISDAVLDAILKQDKKARVACETYVKTGMVMVGGEITTDAWVDIEEITRNTVRNIGYTSSEMGFDA 87          

HSP 2 Score: 25.0238 bits (53), Expect = 1.012e-19
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M   LFTSESV+EGH
Sbjct:    1 MSRDLFTSESVSEGH 15          
The following BLAST results are available for this feature:
BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_HUMAN4.599e-2060.00S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_RAT5.981e-2058.57S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_MOUSE5.981e-2060.00S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_CLOBB5.982e-2058.57S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_PROMT7.774e-2058.33S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_GEOSW1.011e-1960.56S-adenosylmethionine synthetase OS=Geobacillus sp.... [more]
METK_CLOPH1.012e-1961.97S-adenosylmethionine synthetase OS=Clostridium phy... [more]
METK_GEOSM1.012e-1958.57S-adenosylmethionine synthetase OS=Geobacter sp. (... [more]
METK_METFK1.012e-1958.57S-adenosylmethionine synthetase OS=Methylobacillus... [more]
METK_PSYIN1.012e-1963.38S-adenosylmethionine synthetase OS=Psychromonas in... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
back to top