CF504285

Overview
NameCF504285
Unique NameCF504285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_RHOBA (S-adenosylmethionine synthetase OS=Rhodopirellula baltica GN=metK PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.316e-19
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DKL D++SD++LDA LAQDP S+VACET   T + ++ GEI++KA+VDYEKIVRDT  ++G+   D+G+D
Sbjct:   21 DKLADRISDSILDALLAQDPHSRVACETLVTTGLAVIAGEISSKADVDYEKIVRDTIVAVGYDDPDIGID 90          

HSP 2 Score: 24.2534 bits (51), Expect = 1.316e-19
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            FLFTSESV+ GH
Sbjct:    8 FLFTSESVSMGH 19          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_GEOUR (S-adenosylmethionine synthetase OS=Geobacter uraniireducens (strain Rf4) GN=metK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.316e-19
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L QDP S+VACET   T M +V GEITT A VDY KIVR+T + IG+  + +G D
Sbjct:   19 DKVADQVSDAILDAILTQDPKSRVACETLVTTGMTVVAGEITTNAIVDYPKIVRETIKEIGYNDSAMGFD 88          

HSP 2 Score: 28.1054 bits (61), Expect = 1.316e-19
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M+ F+FTSESV+EGH
Sbjct:    3 MKDFIFTSESVSEGH 17          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.711e-19
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+CDQ+SDAVLDA L QDP++KVACET  KT MV++ GEIT+ A VDY+++VR+T + IG+  +  G D
Sbjct:   32 DKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRETIQHIGYDDSAKGFD 101          

HSP 2 Score: 25.7942 bits (55), Expect = 1.711e-19
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            F+FTSESV EGH
Sbjct:   19 FMFTSESVGEGH 30          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_CLOBA (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=metK PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.712e-19
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+CDQ+SDA+LDA LA+D +++VACETCT T +VMV GEI+T   VD  K+VR+T R IG+  A  G D
Sbjct:   16 DKMCDQISDAILDAILAKDSNARVACETCTTTGLVMVMGEISTNCYVDIPKVVRETVREIGYDRAKYGFD 85          

HSP 2 Score: 24.2534 bits (51), Expect = 1.712e-19
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    4 LFTSESVTEGH 14          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHEWM (S-adenosylmethionine synthetase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MVMV GE+TT A VD E+I R+T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRNTVREIGYTHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHEB9 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS195) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA LAQDP ++VACET  KT MV+V GE+TT A VD E+I R T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHEB8 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS185) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA LAQDP ++VACET  KT MV+V GE+TT A VD E+I R T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHEB5 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA LAQDP ++VACET  KT MV+V GE+TT A VD E+I R T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHEB2 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS223) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA LAQDP ++VACET  KT MV+V GE+TT A VD E+I R T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_GEOTN (S-adenosylmethionine synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=metK PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.225e-19
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+CDQ+SDA+LDA L +DP+++VACET   T +V+V GEITT   VD  +IVRDT R IG+T A  G DA
Sbjct:   19 DKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPRIVRDTVREIGYTRAKFGFDA 89          

HSP 2 Score: 24.2534 bits (51), Expect = 2.225e-19
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17          
The following BLAST results are available for this feature:
BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_RHOBA1.316e-1957.14S-adenosylmethionine synthetase OS=Rhodopirellula ... [more]
METK_GEOUR1.316e-1960.00S-adenosylmethionine synthetase OS=Geobacter urani... [more]
METK1_BOVIN1.711e-1958.57S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_CLOBA1.712e-1958.57S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_SHEWM1.958e-1955.81S-adenosylmethionine synthetase OS=Shewanella wood... [more]
METK_SHEB91.958e-1955.81S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB81.958e-1955.81S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB51.958e-1955.81S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB21.958e-1955.81S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_GEOTN2.225e-1959.15S-adenosylmethionine synthetase OS=Geobacillus the... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
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