CF504285

Overview
NameCF504285
Unique NameCF504285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12594 contig Csv1_Contig12594:72..460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_GEOKA (S-adenosylmethionine synthetase OS=Geobacillus kaustophilus GN=metK PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.225e-19
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+CDQ+SDA+LDA L +DP+++VACET   T +V+V GEITT   VD  +IVRDT R IG+T A  G DA
Sbjct:   19 DKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPRIVRDTVREIGYTRAKYGFDA 89          

HSP 2 Score: 24.2534 bits (51), Expect = 2.225e-19
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_NITMU (S-adenosylmethionine synthetase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=metK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.225e-19
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SD++LDA LAQDP+++VACET   T ++++ GEITT+ANVDY ++ R   + IG+ S+D+G D
Sbjct:   17 DKVADQISDSILDAILAQDPNARVACETLCSTGLIVMSGEITTQANVDYMQVARAAVKRIGYNSSDIGFD 86          

HSP 2 Score: 27.335 bits (59), Expect = 2.225e-19
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M  +LFTSESV+EGH
Sbjct:    1 MSEYLFTSESVSEGH 15          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_LACPL (S-adenosylmethionine synthetase OS=Lactobacillus plantarum GN=metK PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.226e-19
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDA+LDA LAQDP ++VA ET   T +V+VFGE++TKA VD +K+VRDT +SIG+     G D
Sbjct:   18 DKIADQISDAILDAMLAQDPQARVAVETSVTTGLVLVFGEVSTKAYVDIQKVVRDTIKSIGYVDGQYGFD 87          

HSP 2 Score: 25.7942 bits (55), Expect = 2.226e-19
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERHLFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_CALS8 (S-adenosylmethionine synthetase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=metK PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.895e-19
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+CDQ+SDAVLDA L +DP ++VACE    T +V+V GEITTK  VD  KI RDT R IG+T A  G DA
Sbjct:   16 DKICDQISDAVLDAILEKDPYARVACEVAVTTGLVLVMGEITTKCYVDIPKIARDTIREIGYTRAKYGFDA 86          

HSP 2 Score: 24.2534 bits (51), Expect = 2.895e-19
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    4 LFTSESVTEGH 14          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_ANATD (S-adenosylmethionine synthetase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=metK PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.895e-19
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+CDQ+SDAVLDA L +DP ++VACE    T +V+V GEITTK  VD  KI RDT R IG+T A  G DA
Sbjct:   16 DKICDQISDAVLDAILEKDPYARVACEVAVTTGLVLVMGEITTKCYVDIPKIARDTIREIGYTRAKYGFDA 86          

HSP 2 Score: 24.2534 bits (51), Expect = 2.895e-19
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    4 LFTSESVTEGH 14          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHESW (S-adenosylmethionine synthetase OS=Shewanella sp. (strain W3-18-1) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.340e-19
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA LAQDP ++VACET  KT MV+V GE+TT A VD E++ R T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYTHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHESH (S-adenosylmethionine synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.340e-19
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MVMV GE+TT A VD E+I R T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHEPW (S-adenosylmethionine synthetase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.340e-19
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MVMV GE+TT A VD E+I R T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHEPC (S-adenosylmethionine synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.340e-19
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA LAQDP ++VACET  KT MV+V GE+TT A VD E++ R T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYTHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHEPA (S-adenosylmethionine synthetase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.340e-19
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MVMV GE+TT A VD E+I R T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRKTVRDIGYTHSDMGFDA 87          
The following BLAST results are available for this feature:
BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_GEOKA2.225e-1959.15S-adenosylmethionine synthetase OS=Geobacillus kau... [more]
METK_NITMU2.225e-1952.86S-adenosylmethionine synthetase OS=Nitrosospira mu... [more]
METK_LACPL2.226e-1957.14S-adenosylmethionine synthetase OS=Lactobacillus p... [more]
METK_CALS82.895e-1960.56S-adenosylmethionine synthetase OS=Caldicellulosir... [more]
METK_ANATD2.895e-1960.56S-adenosylmethionine synthetase OS=Anaerocellum th... [more]
METK_SHESW3.340e-1954.65S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_SHESH3.340e-1955.81S-adenosylmethionine synthetase OS=Shewanella sedi... [more]
METK_SHEPW3.340e-1955.81S-adenosylmethionine synthetase OS=Shewanella piez... [more]
METK_SHEPC3.340e-1954.65S-adenosylmethionine synthetase OS=Shewanella putr... [more]
METK_SHEPA3.340e-1955.81S-adenosylmethionine synthetase OS=Shewanella peal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
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