CF504285

Overview
NameCF504285
Unique NameCF504285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHEHH (S-adenosylmethionine synthetase OS=Shewanella halifaxensis (strain HAW-EB4) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.340e-19
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MVMV GE+TT A VD E+I R T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRKTVRDIGYTHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_PSEA6 (S-adenosylmethionine synthetase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.340e-19
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MVMV GE+TT A VD E++ R+T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILKQDPKARVACETYVKTGMVMVGGEVTTNAWVDIEELTRNTVREIGYTHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_MESFL (S-adenosylmethionine synthetase OS=Mesoplasma florum GN=metK PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.768e-19
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+CDQ+SDA+LD  L QDP++KVACET   TN +++ G+ITT A+VDYEKI RD  R IG+ +   G++A
Sbjct:   16 DKICDQISDAILDEVLKQDPNAKVACETFATTNYLLIGGQITTTASVDYEKIARDVLRKIGYNNDAYGINA 86          

HSP 2 Score: 24.6386 bits (52), Expect = 3.768e-19
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV+EGH
Sbjct:    4 LFTSESVSEGH 14          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHEFN (S-adenosylmethionine synthetase OS=Shewanella frigidimarina (strain NCIMB 400) GN=metK PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.362e-19
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MV+V GE+TT A VD E+I R T R IG+T++D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTNSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_CARHZ (S-adenosylmethionine synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=metK PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.895e-19
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDAVLDA LAQDP ++VACET   T +V+V GEITT   VD  K+VR+T R IG+T A  G D
Sbjct:   17 DKIADQISDAVLDAILAQDPQARVACETAVTTGLVLVIGEITTSCYVDIPKVVRETIREIGYTRAKYGFD 86          

HSP 2 Score: 24.2534 bits (51), Expect = 4.895e-19
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    5 LFTSESVTEGH 15          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_DELAS (S-adenosylmethionine synthetase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=metK PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.896e-19
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDA+LDA  AQDP S+VA ET T T +V++ GEITT ANVDY ++ RDT + IG+ + D G+D
Sbjct:   18 DKVADQISDAILDAIFAQDPYSRVAAETLTNTGLVVLAGEITTGANVDYIQVARDTIKRIGYDNTDYGID 87          

HSP 2 Score: 26.9498 bits (58), Expect = 4.896e-19
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            FLFTSESV+EGH
Sbjct:    5 FLFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_GEOMG (S-adenosylmethionine synthetase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=metK PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.897e-19
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSD++LDA LAQDP ++VACET   T M ++ GEITT A VDY K+VR+T R IG+  + +G D
Sbjct:   19 DKVADQVSDSILDAILAQDPRARVACETLVTTGMAVIAGEITTSAVVDYPKVVRETIREIGYNDSAMGFD 88          

HSP 2 Score: 26.9498 bits (58), Expect = 4.897e-19
Identity = 10/15 (66.67%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M+ ++FTSESV+EGH
Sbjct:    3 MKDYIFTSESVSEGH 17          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_LEPIN (S-adenosylmethionine synthetase OS=Leptospira interrogans GN=metK PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.898e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+CDQ+SDAVLDA L QDP S+VACET   TN+V++ GEIT+K  VD ++I R+  R IG+    +G DA
Sbjct:   19 DKVCDQISDAVLDAYLEQDPKSRVACETLVTTNLVVIAGEITSKGKVDAQEIARNVIRDIGYNDITMGFDA 89          

HSP 2 Score: 26.5646 bits (57), Expect = 4.898e-19
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            ++ F+FTSESV EGH
Sbjct:    3 LKDFIFTSESVGEGH 17          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_LEPIC (S-adenosylmethionine synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=metK PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.898e-19
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+CDQ+SDAVLDA L QDP S+VACET   TN+V++ GEIT+K  VD ++I R+  R IG+    +G DA
Sbjct:   19 DKVCDQISDAVLDAYLEQDPKSRVACETLVTTNLVVIAGEITSKGKVDAQEIARNVIRDIGYNDITMGFDA 89          

HSP 2 Score: 26.5646 bits (57), Expect = 4.898e-19
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            ++ F+FTSESV EGH
Sbjct:    3 LKDFIFTSESVGEGH 17          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_VIBHB (S-adenosylmethionine synthetase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=metK PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.697e-19
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MVMV GE+TT A VD E+I R+T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRETVREIGYVHSDMGFDA 87          
The following BLAST results are available for this feature:
BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SHEHH3.340e-1955.81S-adenosylmethionine synthetase OS=Shewanella hali... [more]
METK_PSEA63.340e-1954.65S-adenosylmethionine synthetase OS=Pseudoalteromon... [more]
METK_MESFL3.768e-1956.34S-adenosylmethionine synthetase OS=Mesoplasma flor... [more]
METK_SHEFN4.362e-1954.65S-adenosylmethionine synthetase OS=Shewanella frig... [more]
METK_CARHZ4.895e-1960.00S-adenosylmethionine synthetase OS=Carboxydothermu... [more]
METK_DELAS4.896e-1957.14S-adenosylmethionine synthetase OS=Delftia acidovo... [more]
METK_GEOMG4.897e-1957.14S-adenosylmethionine synthetase OS=Geobacter metal... [more]
METK_LEPIN4.898e-1956.34S-adenosylmethionine synthetase OS=Leptospira inte... [more]
METK_LEPIC4.898e-1956.34S-adenosylmethionine synthetase OS=Leptospira inte... [more]
METK_VIBHB5.697e-1954.65S-adenosylmethionine synthetase OS=Vibrio harveyi ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
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