CF504285

Overview
NameCF504285
Unique NameCF504285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_VIBPA (S-adenosylmethionine synthetase OS=Vibrio parahaemolyticus GN=metK PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.441e-19
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MVMV GEITT A VD E++ R+T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEELTRETVREIGYVHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHEDO (S-adenosylmethionine synthetase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=metK PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.441e-19
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MV+V GE+TT A VD E+I R T R IG+T +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEEITRKTVREIGYTHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_PHOPR (S-adenosylmethionine synthetase OS=Photobacterium profundum GN=metK PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.441e-19
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MVMV GEITT A VD E+I R+T R IG+ ++++G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEEITRETIREIGYVNSEMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_FINM2 (S-adenosylmethionine synthetase OS=Finegoldia magna (strain ATCC 29328) GN=metK PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.441e-19
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            K+ F      T    DK+CDQ+SDA+LDA + +D D++VACETC+ T +VMV GEITT + VD   IVR T   IG+ +AD G+DA
Sbjct:    2 KNIFLTSESVTEGHPDKVCDQISDAILDAIIKEDKDARVACETCSTTGLVMVMGEITTTSYVDIRSIVRKTLAEIGYDNADYGIDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SYNS9 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9902) GN=metK PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.273e-19
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVG 381
            DK+CDQVSDAVLDA LAQDP S+VACET   T + M+ GE+T+KA VD+  +VRD  + IG++ A  G
Sbjct:   17 DKICDQVSDAVLDALLAQDPASRVACETVVNTGLCMITGEVTSKAKVDFIHLVRDVIKEIGYSGARAG 84          

HSP 2 Score: 25.7942 bits (55), Expect = 8.273e-19
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M  ++FTSESV EGH
Sbjct:    1 MSRYVFTSESVTEGH 15          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_VIBSL (S-adenosylmethionine synthetase OS=Vibrio splendidus (strain LGP32) GN=metK PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.718e-19
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA + QDP ++VACET  KT MVMV GE+TT A VD E+I R+T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAIIEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRETVREIGYVHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SODGM (S-adenosylmethionine synthetase OS=Sodalis glossinidius (strain morsitans) GN=metK PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.718e-19
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA LAQDP ++VACET  KT MV+V GEITT A VD E++ R T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEITTSAWVDIEELTRSTIREIGYIHSDMGFDA 87          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_LISW6 (S-adenosylmethionine synthetase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=metK PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.076e-18
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA +++DPD++VACET   T +V+V GEITT   VD  KIVRDT + IG+T A  G DA
Sbjct:   19 DKIADQISDAILDAIISKDPDARVACETTVTTGLVLVAGEITTSVYVDIPKIVRDTIKEIGYTRAKYGFDA 89          

HSP 2 Score: 23.483 bits (49), Expect = 1.076e-18
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV++GH
Sbjct:    7 LFTSESVSDGH 17          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_LISMO (S-adenosylmethionine synthetase OS=Listeria monocytogenes GN=metK PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.076e-18
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA +++DPD++VACET   T +V+V GEITT   VD  KIVRDT + IG+T A  G DA
Sbjct:   19 DKIADQISDAILDAIISKDPDARVACETTVTTGLVLVAGEITTSVYVDIPKIVRDTIKEIGYTRAKYGFDA 89          

HSP 2 Score: 23.483 bits (49), Expect = 1.076e-18
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV++GH
Sbjct:    7 LFTSESVSDGH 17          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_LISMH (S-adenosylmethionine synthetase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=metK PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.076e-18
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA +++DPD++VACET   T +V+V GEITT   VD  KIVRDT + IG+T A  G DA
Sbjct:   19 DKIADQISDAILDAIISKDPDARVACETTVTTGLVLVAGEITTSVYVDIPKIVRDTIKEIGYTRAKYGFDA 89          

HSP 2 Score: 23.483 bits (49), Expect = 1.076e-18
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV++GH
Sbjct:    7 LFTSESVSDGH 17          
The following BLAST results are available for this feature:
BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_VIBPA7.441e-1954.65S-adenosylmethionine synthetase OS=Vibrio parahaem... [more]
METK_SHEDO7.441e-1954.65S-adenosylmethionine synthetase OS=Shewanella deni... [more]
METK_PHOPR7.441e-1954.65S-adenosylmethionine synthetase OS=Photobacterium ... [more]
METK_FINM27.441e-1951.16S-adenosylmethionine synthetase OS=Finegoldia magn... [more]
METK_SYNS98.273e-1958.82S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_VIBSL9.718e-1953.49S-adenosylmethionine synthetase OS=Vibrio splendid... [more]
METK_SODGM9.718e-1954.65S-adenosylmethionine synthetase OS=Sodalis glossin... [more]
METK_LISW61.076e-1857.75S-adenosylmethionine synthetase OS=Listeria welshi... [more]
METK_LISMO1.076e-1857.75S-adenosylmethionine synthetase OS=Listeria monocy... [more]
METK_LISMH1.076e-1857.75S-adenosylmethionine synthetase OS=Listeria monocy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
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