CF504285

Overview
NameCF504285
Unique NameCF504285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHISS (S-adenosylmethionine synthetase OS=Shigella sonnei (strain Ss046) GN=metK PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MV+V GEITT A VD E+I R+T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDA 87
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHIFL (S-adenosylmethionine synthetase OS=Shigella flexneri GN=metK PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MV+V GEITT A VD E+I R+T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDA 87
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHIF8 (S-adenosylmethionine synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=metK PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MV+V GEITT A VD E+I R+T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDA 87
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHIDS (S-adenosylmethionine synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=metK PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MV+V GEITT A VD E+I R+T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDA 87
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHIBS (S-adenosylmethionine synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=metK PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MV+V GEITT A VD E+I R+T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDA 87
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHIB3 (S-adenosylmethionine synthetase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=metK PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MV+V GEITT A VD E+I R+T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDA 87
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHESR (S-adenosylmethionine synthetase OS=Shewanella sp. (strain MR-7) GN=metK PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA LAQDP ++VACET  KT MV+V GE+TT A VD E++ R T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYVHSDMGFDA 87
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHESM (S-adenosylmethionine synthetase OS=Shewanella sp. (strain MR-4) GN=metK PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA LAQDP ++VACET  KT MV+V GE+TT A VD E++ R T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYVHSDMGFDA 87
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SHESA (S-adenosylmethionine synthetase OS=Shewanella sp. (strain ANA-3) GN=metK PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA LAQDP ++VACET  KT MV+V GE+TT A VD E++ R T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYVHSDMGFDA 87
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SALTY (S-adenosylmethionine synthetase OS=Salmonella typhimurium GN=metK PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            KH F+ ++  +    DK+ DQ+SDAVLDA L QDP ++VACET  KT MV+V GEITT A VD E+I R+T R IG+  +D+G DA
Sbjct:    3 KHLFTSESV-SEGHPDKIADQISDAVLDAILQQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDA 87
The following BLAST results are available for this feature:
BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SHISS1.269e-1854.65S-adenosylmethionine synthetase OS=Shigella sonnei... [more]
METK_SHIFL1.269e-1854.65S-adenosylmethionine synthetase OS=Shigella flexne... [more]
METK_SHIF81.269e-1854.65S-adenosylmethionine synthetase OS=Shigella flexne... [more]
METK_SHIDS1.269e-1854.65S-adenosylmethionine synthetase OS=Shigella dysent... [more]
METK_SHIBS1.269e-1854.65S-adenosylmethionine synthetase OS=Shigella boydii... [more]
METK_SHIB31.269e-1854.65S-adenosylmethionine synthetase OS=Shigella boydii... [more]
METK_SHESR1.269e-1853.49S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_SHESM1.269e-1853.49S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_SHESA1.269e-1853.49S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_SALTY1.269e-1854.65S-adenosylmethionine synthetase OS=Salmonella typh... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
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