CF504285

Overview
NameCF504285
Unique NameCF504285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_BACSU (S-adenosylmethionine synthetase OS=Bacillus subtilis GN=metK PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 3.266e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+CDQ+SD++LD  L +DP+++VACET   T +V+V GEITT   VD  K VR T + IG+T A  G DA
Sbjct:   19 DKICDQISDSILDEILKKDPNARVACETSVTTGLVLVSGEITTSTYVDIPKTVRQTIKEIGYTRAKYGFDA 89          

HSP 2 Score: 24.2534 bits (51), Expect = 3.266e-17
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_LACAC (S-adenosylmethionine synthetase OS=Lactobacillus acidophilus GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.266e-17
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDA+LDA L +DP+S VACET   T MV VFGEI+T A VD + +VR T   IG+   ++G D
Sbjct:   17 DKVADQISDAILDAMLKKDPNSHVACETIVTTGMVFVFGEISTSAYVDIQDVVRKTILKIGYDRPELGFD 86          

HSP 2 Score: 26.9498 bits (58), Expect = 3.266e-17
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            ME  LFTSESV+EGH
Sbjct:    1 MEKRLFTSESVSEGH 15          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRU0 (S-adenosylmethionine synthetase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=metK PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.267e-17
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA LA+DP++ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+A+ G  A
Sbjct:   18 DKIADQISDAILDAILAEDPEAHVAAETVVYTGSVHVFGEISTSAYVDINRVVRDTIAEIGYTNAEYGFSA 88          

HSP 2 Score: 25.0238 bits (53), Expect = 3.267e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRSV (S-adenosylmethionine synthetase OS=Streptococcus sanguinis (strain SK36) GN=metK PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.267e-17
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA L+QDPD+ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A
Sbjct:   18 DKIADQISDAILDAVLSQDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTNTEYGFSA 88          

HSP 2 Score: 25.0238 bits (53), Expect = 3.267e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRGC (S-adenosylmethionine synthetase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=metK PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.267e-17
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA L+QDPD+ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A
Sbjct:   18 DKIADQISDAILDAVLSQDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTNTEYGFSA 88          

HSP 2 Score: 25.0238 bits (53), Expect = 3.267e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_PSEMY (S-adenosylmethionine synthetase OS=Pseudomonas mendocina (strain ymp) GN=metK PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.267e-17
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDAVLDA + QD  ++VA ET  KT + +V GE+TT A VD E+IVRD   +IG+TS+DVG D
Sbjct:   18 DKIADQISDAVLDAIIVQDKHARVAVETLVKTGVAIVAGEVTTSAWVDLEQIVRDVICNIGYTSSDVGFD 87          

HSP 2 Score: 25.0238 bits (53), Expect = 3.267e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 EYSLFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_BURP8 (S-adenosylmethionine synthetase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=metK PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.267e-17
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDA+LDA LAQD  S+VA ET   T +V++ GEITT ANVDY ++ R+T + IG+ + D G+D
Sbjct:   18 DKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANVDYIQVARETIKRIGYDNTDYGID 87          

HSP 2 Score: 25.7942 bits (55), Expect = 3.267e-17
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            +LFTSESV+EGH
Sbjct:    5 YLFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_RHOFD (S-adenosylmethionine synthetase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.267e-17
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDA+LDA   QDP S+VA ET   T +V++ GEITT A+VDY ++ RDT + IG+ + + G+D
Sbjct:   18 DKVADQISDAILDAIFKQDPKSRVAAETLCNTGLVVLAGEITTNAHVDYIQVARDTLKRIGYDNTEYGID 87          

HSP 2 Score: 26.9498 bits (58), Expect = 3.267e-17
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            FLFTSESV+EGH
Sbjct:    5 FLFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_METCA (S-adenosylmethionine synthetase OS=Methylococcus capsulatus GN=metK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.268e-17
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDAVLDA LAQDP ++VA ET  KT MV++ GE+TT A VD E++VR     IG+ + ++G D
Sbjct:   18 DKIADQVSDAVLDAILAQDPKARVAVETLVKTGMVVLAGEVTTSAWVDTEELVRKVVHEIGYDNPEIGFD 87          

HSP 2 Score: 26.5646 bits (57), Expect = 3.268e-17
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 3
Query:  135 TFLFTSESVNEGH 173
            +F+FTSESV+EGH
Sbjct:    4 SFIFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_HAES2 (S-adenosylmethionine synthetase OS=Haemophilus somnus (strain 2336) GN=metK PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.269e-17
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDAVLD  L QDP ++VACET  KT M +V GEITT A VD E + R     IG+  +D+G D
Sbjct:   17 DKIADQISDAVLDEILRQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYKHSDIGFD 86          

HSP 2 Score: 28.1054 bits (61), Expect = 3.269e-17
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M ++LFTSESV+EGH
Sbjct:    1 MSSYLFTSESVSEGH 15          
The following BLAST results are available for this feature:
BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BACSU3.266e-1753.52S-adenosylmethionine synthetase OS=Bacillus subtil... [more]
METK_LACAC3.266e-1754.29S-adenosylmethionine synthetase OS=Lactobacillus a... [more]
METK_STRU03.267e-1754.93S-adenosylmethionine synthetase OS=Streptococcus u... [more]
METK_STRSV3.267e-1754.93S-adenosylmethionine synthetase OS=Streptococcus s... [more]
METK_STRGC3.267e-1754.93S-adenosylmethionine synthetase OS=Streptococcus g... [more]
METK_PSEMY3.267e-1757.14S-adenosylmethionine synthetase OS=Pseudomonas men... [more]
METK_BURP83.267e-1754.29S-adenosylmethionine synthetase OS=Burkholderia ph... [more]
METK_RHOFD3.267e-1751.43S-adenosylmethionine synthetase OS=Rhodoferax ferr... [more]
METK_METCA3.268e-1755.71S-adenosylmethionine synthetase OS=Methylococcus c... [more]
METK_HAES23.269e-1754.29S-adenosylmethionine synthetase OS=Haemophilus som... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
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