CF504285

Overview
NameCF504285
Unique NameCF504285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_JANMA (S-adenosylmethionine synthetase OS=Janthinobacterium sp. (strain Marseille) GN=metK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.524e-17
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDA+LDA   QDP ++VA ET   T +V++ GEITT ANVDY ++ R T + IG+ +AD G+D
Sbjct:   18 DKVADQISDAILDAIFQQDPKARVAAETLCNTGLVVLAGEITTFANVDYIEVARQTIKRIGYDNADYGID 87          

HSP 2 Score: 25.7942 bits (55), Expect = 5.524e-17
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            +LFTSESV+EGH
Sbjct:    5 YLFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_ACTSZ (S-adenosylmethionine synthetase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=metK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.525e-17
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDAVLD  L QDP ++VACET  KT M +V GEITT A VD E + R     IG+  +D+G D
Sbjct:   17 DKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYKHSDMGFD 86          

HSP 2 Score: 28.1054 bits (61), Expect = 5.525e-17
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M T LFTSESV+EGH
Sbjct:    1 MSTHLFTSESVSEGH 15          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_CLAMS (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=metK PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.173e-17
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+CDQ+SD++LDA L QDP S+ A ET   T +V V GE+TT   VD  +IVRD  R IG+ S++VG D
Sbjct:   18 DKICDQISDSILDALLTQDPSSRAAVETLVTTGLVHVAGEVTTSGYVDIPQIVRDRIRDIGYDSSEVGFD 87          

HSP 2 Score: 24.2534 bits (51), Expect = 7.173e-17
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    6 LFTSESVTEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_PSEU5 (S-adenosylmethionine synthetase OS=Pseudomonas stutzeri (strain A1501) GN=metK PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.177e-17
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDAVLDA +A+D  ++VACET  KT + +V GE+TT A VD E++VRD    IG+ S++VG D
Sbjct:   18 DKIADQISDAVLDAIIAEDKHARVACETLVKTGVAIVAGEVTTSAWVDLEQLVRDVIVDIGYNSSEVGFD 87          

HSP 2 Score: 24.2534 bits (51), Expect = 7.177e-17
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  132 ETFLFTSESVNEGH 173
            E  +FTSESV+EGH
Sbjct:    3 EYSIFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_AZOSE (S-adenosylmethionine synthetase OS=Azoarcus sp. (strain EbN1) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.179e-17
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSD VLDA LA DP ++VACET   T +V++ GEITT A+ +Y +I ++  R IG+ ++D+G D
Sbjct:   18 DKVADQVSDGVLDAILATDPQARVACETLVSTGLVVISGEITTTAHPNYREIAQEVIRRIGYDNSDIGFD 87          

HSP 2 Score: 25.7942 bits (55), Expect = 7.179e-17
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            +LFTSESV+EGH
Sbjct:    5 YLFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_CHRVO (S-adenosylmethionine synthetase OS=Chromobacterium violaceum GN=metK PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.179e-17
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDA+LDA L +D  ++VA ET   T +V++ GEITT ANVDY KI R+T + IG+  +++G D
Sbjct:   17 DKVADQISDAILDAILREDKHARVAAETLVNTGLVVLAGEITTTANVDYIKIARETIKRIGYDDSELGFD 86          

HSP 2 Score: 27.335 bits (59), Expect = 7.179e-17
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M  +LFTSESV+EGH
Sbjct:    1 MSEYLFTSESVSEGH 15          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_RALME (S-adenosylmethionine synthetase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=metK PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.181e-17
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDAVLDA LAQD  ++VA ET   T +V++ GEITT ANVDY ++ R+T + IG+ + + G+D
Sbjct:   18 DKVADQISDAVLDAILAQDKYARVAAETLCNTGLVVLAGEITTTANVDYIQVARETIKRIGYDNTEYGID 87          

HSP 2 Score: 26.9498 bits (58), Expect = 7.181e-17
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            FLFTSESV+EGH
Sbjct:    5 FLFTSESVSEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_CLAM3 (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=metK PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.325e-17
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+CDQ+SD++LDA L QDP S+ A ET   T +V V GE+TT   VD  +IVRD  R IG+ S++VG D
Sbjct:   18 DKICDQISDSILDALLTQDPTSRAAVETLVTTGLVHVAGEVTTSGYVDIPQIVRDRIRDIGYDSSEVGFD 87          

HSP 2 Score: 24.2534 bits (51), Expect = 9.325e-17
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    6 LFTSESVTEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRM5 (S-adenosylmethionine synthetase OS=Stenotrophomonas maltophilia (strain R551-3) GN=metK PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.325e-17
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDAVLDA L QD  ++VACET  KT + +V GEITT A +D E + R     IG+ S+DVG D
Sbjct:   17 DKVADQISDAVLDAILTQDQRARVACETMVKTGVAIVAGEITTSAWIDLEALTRKVIVDIGYDSSDVGFD 86          

HSP 2 Score: 28.1054 bits (61), Expect = 9.325e-17
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M ++LFTSESV+EGH
Sbjct:    1 MSSYLFTSESVSEGH 15          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRT2 (S-adenosylmethionine synthetase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=metK PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.328e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA LA+DPD+ VA ET   T  V VFGE++T A VD  ++VRDT   IG+ +A+ G  A
Sbjct:   18 DKIADQISDAILDAILAEDPDAHVAAETAVYTGSVHVFGEVSTTAYVDINRVVRDTIAEIGYNNAEYGFAA 88          

HSP 2 Score: 25.0238 bits (53), Expect = 9.328e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16          
The following BLAST results are available for this feature:
BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_JANMA5.524e-1752.86S-adenosylmethionine synthetase OS=Janthinobacteri... [more]
METK_ACTSZ5.525e-1754.29S-adenosylmethionine synthetase OS=Actinobacillus ... [more]
METK_CLAMS7.173e-1754.29S-adenosylmethionine synthetase OS=Clavibacter mic... [more]
METK_PSEU57.177e-1754.29S-adenosylmethionine synthetase OS=Pseudomonas stu... [more]
METK_AZOSE7.179e-1751.43S-adenosylmethionine synthetase OS=Azoarcus sp. (s... [more]
METK_CHRVO7.179e-1751.43S-adenosylmethionine synthetase OS=Chromobacterium... [more]
METK_RALME7.181e-1752.86S-adenosylmethionine synthetase OS=Ralstonia metal... [more]
METK_CLAM39.325e-1754.29S-adenosylmethionine synthetase OS=Clavibacter mic... [more]
METK_STRM59.325e-1754.29S-adenosylmethionine synthetase OS=Stenotrophomona... [more]
METK_STRT29.328e-1753.52S-adenosylmethionine synthetase OS=Streptococcus t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
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