CF504285 | Citrus Genome Database

Overview


Name	CF504285
Unique Name	CF504285
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	390

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRZT (S-adenosylmethionine synthetase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=metK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.329e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA LA+DP++ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A
Sbjct:   18 DKIADQISDAILDAILAKDPEAHVAAETAVYTGSVHVFGEISTNAYVDINRVVRDTIAEIGYTNTEYGFSA 88

HSP 2 Score: 25.0238 bits (53), Expect = 9.329e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRZP (S-adenosylmethionine synthetase OS=Streptococcus pneumoniae (strain P1031) GN=metK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.329e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA LA+DP++ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A
Sbjct:   18 DKIADQISDAILDAILAKDPEAHVAAETAVYTGSVHVFGEISTNAYVDINRVVRDTIAEIGYTNTEYGFSA 88

HSP 2 Score: 25.0238 bits (53), Expect = 9.329e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRZJ (S-adenosylmethionine synthetase OS=Streptococcus pneumoniae (strain JJA) GN=metK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.329e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA LA+DP++ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A
Sbjct:   18 DKIADQISDAILDAILAKDPEAHVAAETAVYTGSVHVFGEISTNAYVDINRVVRDTIAEIGYTNTEYGFSA 88

HSP 2 Score: 25.0238 bits (53), Expect = 9.329e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRR6 (S-adenosylmethionine synthetase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=metK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.329e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA LA+DP++ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A
Sbjct:   18 DKIADQISDAILDAILAKDPEAHVAAETAVYTGSVHVFGEISTNAYVDINRVVRDTIAEIGYTNTEYGFSA 88

HSP 2 Score: 25.0238 bits (53), Expect = 9.329e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRPS (S-adenosylmethionine synthetase OS=Streptococcus pneumoniae (strain CGSP14) GN=metK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.329e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA LA+DP++ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A
Sbjct:   18 DKIADQISDAILDAILAKDPEAHVAAETAVYTGSVHVFGEISTNAYVDINRVVRDTIAEIGYTNTEYGFSA 88

HSP 2 Score: 25.0238 bits (53), Expect = 9.329e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRPN (S-adenosylmethionine synthetase OS=Streptococcus pneumoniae GN=metK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.329e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA LA+DP++ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A
Sbjct:   18 DKIADQISDAILDAILAKDPEAHVAAETAVYTGSVHVFGEISTNAYVDINRVVRDTIAEIGYTNTEYGFSA 88

HSP 2 Score: 25.0238 bits (53), Expect = 9.329e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRPJ (S-adenosylmethionine synthetase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=metK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.329e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA LA+DP++ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A
Sbjct:   18 DKIADQISDAILDAILAKDPEAHVAAETAVYTGSVHVFGEISTNAYVDINRVVRDTIAEIGYTNTEYGFSA 88

HSP 2 Score: 25.0238 bits (53), Expect = 9.329e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRPI (S-adenosylmethionine synthetase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=metK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.329e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA LA+DP++ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A
Sbjct:   18 DKIADQISDAILDAILAKDPEAHVAAETAVYTGSVHVFGEISTNAYVDINRVVRDTIAEIGYTNTEYGFSA 88

HSP 2 Score: 25.0238 bits (53), Expect = 9.329e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRP7 (S-adenosylmethionine synthetase OS=Streptococcus pneumoniae (strain 70585) GN=metK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.329e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA LA+DP++ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A
Sbjct:   18 DKIADQISDAILDAILAKDPEAHVAAETAVYTGSVHVFGEISTNAYVDINRVVRDTIAEIGYTNTEYGFSA 88

HSP 2 Score: 25.0238 bits (53), Expect = 9.329e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STRP4 (S-adenosylmethionine synthetase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=metK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.329e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDA+LDA LA+DP++ VA ET   T  V VFGEI+T A VD  ++VRDT   IG+T+ + G  A
Sbjct:   18 DKIADQISDAILDAILAKDPEAHVAAETAVYTGSVHVFGEISTNAYVDINRVVRDTIAEIGYTNTEYGFSA 88

HSP 2 Score: 25.0238 bits (53), Expect = 9.329e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  132 ETFLFTSESVNEGH 173
            E  LFTSESV+EGH
Sbjct:    3 ERKLFTSESVSEGH 16

The following BLAST results are available for this feature:

BLAST of CF504285 vs. ExPASy Swiss-Prot

BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK_STRZT	9.329e-17	53.52	S-adenosylmethionine synthetase OS=Streptococcus p...	[more]
METK_STRZP	9.329e-17	53.52	S-adenosylmethionine synthetase OS=Streptococcus p...	[more]
METK_STRZJ	9.329e-17	53.52	S-adenosylmethionine synthetase OS=Streptococcus p...	[more]
METK_STRR6	9.329e-17	53.52	S-adenosylmethionine synthetase OS=Streptococcus p...	[more]
METK_STRPS	9.329e-17	53.52	S-adenosylmethionine synthetase OS=Streptococcus p...	[more]
METK_STRPN	9.329e-17	53.52	S-adenosylmethionine synthetase OS=Streptococcus p...	[more]
METK_STRPJ	9.329e-17	53.52	S-adenosylmethionine synthetase OS=Streptococcus p...	[more]
METK_STRPI	9.329e-17	53.52	S-adenosylmethionine synthetase OS=Streptococcus p...	[more]
METK_STRP7	9.329e-17	53.52	S-adenosylmethionine synthetase OS=Streptococcus p...	[more]
METK_STRP4	9.329e-17	53.52	S-adenosylmethionine synthetase OS=Streptococcus p...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT