CF504285 | Citrus Genome Database

Overview


Name	CF504285
Unique Name	CF504285
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	390

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_COLP3 (S-adenosylmethionine synthetase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=metK PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.026e-16
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = 1

Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            +HFF+ ++  +    DK+ DQ+SDAVLDA +A+D  ++VACET  KT + ++ GE++T A VD EK+ R+    IG+TS+DVG D
Sbjct:    3 RHFFTSESV-SEGHPDKIADQISDAVLDAIIAKDKHARVACETMVKTGVAIISGEVSTNAWVDLEKLTRNVISDIGYTSSDVGFD 86

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAAW (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain MW2) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAAU (S-adenosylmethionine synthetase OS=Staphylococcus aureus GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAAT (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAAS (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain MSSA476) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAAR (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain MRSA252) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAAN (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain N315) GN=metK PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAAM (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=metK PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAAE (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain Newman) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAAC (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain COL) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

The following BLAST results are available for this feature:

BLAST of CF504285 vs. ExPASy Swiss-Prot

BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK_COLP3	2.026e-16	47.06	S-adenosylmethionine synthetase OS=Colwellia psych...	[more]
METK_STAAW	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAAU	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAAT	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAAS	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAAR	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAAN	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAAM	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAAE	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAAC	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT