CF504285 | Citrus Genome Database

Overview


Name	CF504285
Unique Name	CF504285
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	390

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig12594	contig	Csv1_Contig12594:72..460.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAAB (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=metK PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAA9 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain JH9) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAA8 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain NCTC 8325) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAA3 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain USA300) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAA2 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain JH1) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_STAA1 (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.049e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDA L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D
Sbjct:   19 DKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKEIGYTRAKYGYD 88

HSP 2 Score: 24.2534 bits (51), Expect = 2.049e-16
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3

Query:  141 LFTSESVNEGH 173
            LFTSESV EGH
Sbjct:    7 LFTSESVTEGH 17

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_HAEIN (S-adenosylmethionine synthetase OS=Haemophilus influenzae GN=metK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-16
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDAVLD  L QDP ++VACET  KT M +V GEITT A VD E + R     IG+  +++G D
Sbjct:   17 DKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRKVICDIGYEHSEMGFD 86

HSP 2 Score: 28.1054 bits (61), Expect = 2.051e-16
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            M ++LFTSESV+EGH
Sbjct:    1 MSSYLFTSESVSEGH 15

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_HAEIG (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain PittGG) GN=metK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-16
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDAVLD  L QDP ++VACET  KT M +V GEITT A VD E + R     IG+  +++G D
Sbjct:   17 DKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRKVICDIGYEHSEMGFD 86

HSP 2 Score: 28.1054 bits (61), Expect = 2.051e-16
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            M ++LFTSESV+EGH
Sbjct:    1 MSSYLFTSESVSEGH 15

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_HAEIE (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain PittEE) GN=metK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-16
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDAVLD  L QDP ++VACET  KT M +V GEITT A VD E + R     IG+  +++G D
Sbjct:   17 DKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRKVICDIGYEHSEMGFD 86

HSP 2 Score: 28.1054 bits (61), Expect = 2.051e-16
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            M ++LFTSESV+EGH
Sbjct:    1 MSSYLFTSESVSEGH 15

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_HAEI8 (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain 86-028NP) GN=metK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-16
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQ+SDAVLD  L QDP ++VACET  KT M +V GEITT A VD E + R     IG+  +++G D
Sbjct:   17 DKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRKVICDIGYEHSEMGFD 86

HSP 2 Score: 28.1054 bits (61), Expect = 2.051e-16
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            M ++LFTSESV+EGH
Sbjct:    1 MSSYLFTSESVSEGH 15

The following BLAST results are available for this feature:

BLAST of CF504285 vs. ExPASy Swiss-Prot

BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK_STAAB	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAA9	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAA8	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAA3	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAA2	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_STAA1	2.049e-16	52.86	S-adenosylmethionine synthetase OS=Staphylococcus ...	[more]
METK_HAEIN	2.051e-16	52.86	S-adenosylmethionine synthetase OS=Haemophilus inf...	[more]
METK_HAEIG	2.051e-16	52.86	S-adenosylmethionine synthetase OS=Haemophilus inf...	[more]
METK_HAEIE	2.051e-16	52.86	S-adenosylmethionine synthetase OS=Haemophilus inf...	[more]
METK_HAEI8	2.051e-16	52.86	S-adenosylmethionine synthetase OS=Haemophilus inf...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT