CF504298

Overview
NameCF504298
Unique NameCF504298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504298_ssr50 microsatellite CF504298_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4194 contig Csv1_Contig4194:28..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17E_META3 (30S ribosomal protein S17e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps17e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.845e-12
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 258
            MGR+R   +K++   ++E+Y  R+T DF TNKK+++EVA I +KRLRN++AG+ T  MK++
Sbjct:    1 MGRIRQTFIKRAGEDLVEKYEDRLTTDFETNKKVIDEVAEIATKRLRNRVAGYVTKKMKKV 61
The following BLAST results are available for this feature:
BLAST of CF504298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17E_META36.845e-1247.5430S ribosomal protein S17e OS=Methanococcus aeolic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-787 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504298 ID=CF504298; Name=CF504298; organism=Citrus sinensis; type=EST; length=513bp
TCTTGACATCTCAAGCTCTTCTGCTTCACCGTCTTTGTCTTCTTCAAGAC
AGCAGCAGCAGCTTCTTAAACTGAAATGGGTCGTGTTCGTACCAAGACCG
TGAAGAAGTCCTCTCGCCAGGTGATTGAGAGGTACTACTCAAGAATGACA
CTGGACTTCCATACCAACAAGAAGATTTTGGAGGAGGTTGCTATCATCCC
CTCGAAGAGGCTGCGTAACAAAATTGCTGGGTTCTCAACCCATTTGATGA
AGAGGATTCAGAAGGGTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAA
GAGGAGCGCGAACGCCGCATGGACTTTGTGCCTGATGAGTCAGCTATTAA
GACTGATGAAATTAAGGTTGACAAGGAAACCTTGGATATGCTTGCTGCTC
TTGGCATGTCTGACATTTCTGGGCTTGTTGAAGTTGAGCCACAGAGCATG
ATTGCTCCTCCAGTTTTTGGTCGGGGTGGTGGCAGGAGGTACTGAGTTAA
TTGAGGCTTTGTG
back to top