CF504318

Overview
NameCF504318
Unique NameCF504318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_SULSO (Probable lipoyl synthase OS=Sulfolobus solfataricus GN=lipA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.360e-20
Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+G  CTRGCRFC V   +            VAEA+    LDYVVITSVDRDDL+D G+ HFA  V+ +KEL P +++E L PDFRG
Sbjct:   48 ATFMIMGSICTRGCRFCYVLKGKPSPLDDEEPK-RVAEAVKEMELDYVVITSVDRDDLSDGGAQHFANVVKTVKELNPGIIVEVLTPDFRG 137          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_PYRAR (Probable lipoyl synthase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.360e-20
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MILG+ CTR CRFC+V+T              VAEA+   GL YVV+TSVDRDDL D G+  +A  +R+++ L P  L+E L PDFRG
Sbjct:   51 ATFMILGEVCTRACRFCSVRTGNPRGYVDLDEPRRVAEAVRRLGLRYVVVTSVDRDDLPDGGAFQYASAIREIRRLAPGALVEVLTPDFRG 141          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPL (Lipoyl synthase OS=Legionella pneumophila (strain Lens) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.360e-20
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR CRFC+V T             N AE +A   LDYVV+TSV+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G
Sbjct:   89 ATIMLMGAVCTRACRFCSVDTGNPHGWLDAEEPENTAETVALMNLDYVVLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPH (Lipoyl synthase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.360e-20
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR CRFC+V T             N AE +A   LDYVV+TSV+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G
Sbjct:   89 ATIMLMGAVCTRACRFCSVDTGNPHGWLDAEEPENTAETVALMNLDYVVLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPC (Lipoyl synthase OS=Legionella pneumophila (strain Corby) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.360e-20
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR CRFC+V T             N AE +A   LDYVV+TSV+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G
Sbjct:   89 ATIMLMGAVCTRACRFCSVDTGNPHGWLDAEEPENTAETVALMNLDYVVLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPA (Lipoyl synthase OS=Legionella pneumophila (strain Paris) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.360e-20
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR CRFC+V T             N AE +A   LDYVV+TSV+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G
Sbjct:   89 ATIMLMGAVCTRACRFCSVDTGNPHGWLDAEEPENTAETVALMNLDYVVLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_BEII9 (Lipoyl synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=lipA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.360e-20
Identity = 48/89 (53.93%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNVKT             ++A+A+   GL +VVITSVDRDDLAD G+ HFAQ +R ++E  P   IE L PDF
Sbjct:   83 ATFMIMGDTCTRACAFCNVKTG-LPNGLDPHEPAHIADAVQKLGLSHVVITSVDRDDLADGGAEHFAQVIRAIREASPKTTIEVLTPDF 170          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_BACFN (Lipoyl synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=lipA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.320e-20
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI GD CTR C+FCN +T R          T+VAE+IA   L + VITSVDRDDL D G+ H+AQT+R++K L P    E L+PDF+G
Sbjct:   56 ATFMIAGDICTRSCKFCNTQTGRPLPLDPDEP-THVAESIALMKLSHAVITSVDRDDLPDLGAAHWAQTIREIKRLNPETTTEVLIPDFQG 145          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RHOP5 (Lipoyl synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=lipA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.958e-20
Identity = 50/89 (56.18%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNVKT             NVAEA A  GL ++VITSVDRDDLAD G+ H A T+R ++E  P+  IE L PDF
Sbjct:   78 ATFMIMGDTCTRACAFCNVKTGMPAALDGAEP-ANVAEATAKLGLAHLVITSVDRDDLADGGAAHIAATIRAVRERCPSTTIEVLTPDF 165          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_HAHCH (Lipoyl synthase OS=Hahella chejuensis (strain KCTC 2396) GN=lipA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.958e-20
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R          T++A+AIA   L YVVITSVDRDDL D G+GHFA+ + + ++  PN+ IE LVPDFRG
Sbjct:   96 ATFMIMGDICTRRCPFCDVAHGRPNALDENEP-THLAQAIAEMNLKYVVITSVDRDDLRDGGAGHFAKCISESRKYSPNLKIEVLVPDFRG 185          
The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_SULSO1.360e-2053.85Probable lipoyl synthase OS=Sulfolobus solfataricu... [more]
LIPA_PYRAR1.360e-2050.55Probable lipoyl synthase OS=Pyrobaculum arsenaticu... [more]
LIPA_LEGPL1.360e-2049.45Lipoyl synthase OS=Legionella pneumophila (strain ... [more]
LIPA_LEGPH1.360e-2049.45Lipoyl synthase OS=Legionella pneumophila subsp. p... [more]
LIPA_LEGPC1.360e-2049.45Lipoyl synthase OS=Legionella pneumophila (strain ... [more]
LIPA_LEGPA1.360e-2049.45Lipoyl synthase OS=Legionella pneumophila (strain ... [more]
LIPA_BEII91.360e-2053.93Lipoyl synthase OS=Beijerinckia indica subsp. indi... [more]
LIPA_BACFN2.320e-2052.75Lipoyl synthase OS=Bacteroides fragilis (strain AT... [more]
LIPA_RHOP53.958e-2056.18Lipoyl synthase OS=Rhodopseudomonas palustris (str... [more]
LIPA_HAHCH3.958e-2053.85Lipoyl synthase OS=Hahella chejuensis (strain KCTC... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-807 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bp
GCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTTTTG
CAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGCCTA
CTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTGATT
ACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTTTGC
TCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTGAAG
CATTGGTTCCTGATTTTCGCGGAAA
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