CF504318

Overview
NameCF504318
Unique NameCF504318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RHORT (Lipoyl synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=lipA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.350e-19
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFR 270
            AT MILGD CTR C FCNV+T +           N+A+++ + GL +VVITSVDRDDLAD G+GHF + + +++   P+  IE L PDFR
Sbjct:   70 ATFMILGDICTRACAFCNVRTGKPGHVDDQEP-VNLADSVVAMGLKHVVITSVDRDDLADGGAGHFHRCITEVRSRAPSCSIEVLTPDFR 158          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_METNO (Lipoyl synthase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=lipA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.350e-19
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNV+T              VA+A+A  GL +VVITSVDRDDL D G+GHFA  +  +++  P   IE L PDF
Sbjct:   77 ATFMIMGDTCTRACAFCNVRTG-LPQGLDGDEPARVADAVARLGLSHVVITSVDRDDLRDGGAGHFAAVIGAIRQASPGTTIEVLTPDF 164          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_DELAS (Lipoyl synthase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=lipA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.350e-19
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+A+ IA   L YVVITSVDRDDL D GSGHF + ++ ++EL P   IE LVPDFRG
Sbjct:   91 ATFMIMGDKCTRRCPFCDVGHGRPDPLDTNEPL-NLAKTIAELRLKYVVITSVDRDDLRDGGSGHFVECIKNIRELSPLTQIEILVPDFRG 180          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_XANP2 (Lipoyl synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=lipA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.376e-19
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNV+T              V +A+A  GL +VVITSVDRDDLAD G+ HFA+T+  +++  P   IE L PDF
Sbjct:   74 ATFMIMGDTCTRACAFCNVRTGMPEALDQGEPQ-KVGDAVAKLGLSHVVITSVDRDDLADGGAEHFARTIAAIRKASPGTTIEILTPDF 161          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_SILST (Lipoyl synthase OS=Silicibacter sp. (strain TM1040) GN=lipA PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.376e-19
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT+MI+G+ CTRGC FCN+ T R            VA A+   GL++VVITSVDRDDL D G+ HFAQT+R ++   P   IE L PDF
Sbjct:   72 ATMMIMGEICTRGCTFCNIATGRPDTLDAFEPG-RVAHAVQKLGLNHVVITSVDRDDLEDGGADHFAQTIRAVRHRSPQTTIEILTPDF 159          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_PASMU (Lipoyl synthase OS=Pasteurella multocida GN=lipA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.376e-19
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MILG  CTR C FC+V   +            +AE I    L YVVITSVDRDDL D+G+GHFA+ V+++++L PN+ IE LVPDFRG
Sbjct:   84 ATFMILGAICTRRCPFCDVAHGKPLPPDPEEPR-KLAETIQDMKLRYVVITSVDRDDLPDRGAGHFAECVKEIRQLNPNIKIEILVPDFRG 173          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_DIAST (Lipoyl synthase OS=Diaphorobacter sp. (strain TPSY) GN=lipA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.376e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+A+ IA+  L YVVITSVDRDDL D GSGHF + +++ +EL P+  IE L PDFRG
Sbjct:   91 ATFMIMGDKCTRRCPFCDVGHGRPDPLDKDEPL-NLAKTIAALRLKYVVITSVDRDDLRDGGSGHFVECIQRTRELSPSTQIEILTPDFRG 180          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_ACISJ (Lipoyl synthase OS=Acidovorax sp. (strain JS42) GN=lipA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.376e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+A+ IA+  L YVVITSVDRDDL D GSGHF + +++ +EL P+  IE L PDFRG
Sbjct:   91 ATFMIMGDKCTRRCPFCDVGHGRPDPLDKDEPL-NLAKTIAALRLKYVVITSVDRDDLRDGGSGHFVECIQRTRELSPSTQIEILTPDFRG 180          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RICPR (Lipoyl synthase OS=Rickettsia prowazekii GN=lipA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.715e-19
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT+MILG  CTR CRFCNVKT R            +AEA+    L +VVITSVDRDDL D G+ HFA+ + +++   PN  IE L PDF
Sbjct:   54 ATVMILGAVCTRACRFCNVKTGRPDLLDPHEPR-RLAEAVQKLNLQHVVITSVDRDDLEDGGASHFAECINEIRRSSPNTTIEILTPDF 141          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_PSEU5 (Lipoyl synthase OS=Pseudomonas stutzeri (strain A1501) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+A+AIA   L YVVITSVDRDDL D G+ HFA  +R++++L P++ +E LVPD+RG
Sbjct:   89 ATFMIMGDICTRRCPFCDVGHGRPNALDPDEPK-NLAQAIADMRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPSIQLETLVPDYRG 178          
The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_RHORT3.350e-1950.00Lipoyl synthase OS=Rhodospirillum rubrum (strain A... [more]
LIPA_METNO3.350e-1951.69Lipoyl synthase OS=Methylobacterium nodulans (stra... [more]
LIPA_DELAS3.350e-1953.85Lipoyl synthase OS=Delftia acidovorans (strain DSM... [more]
LIPA_XANP24.376e-1951.69Lipoyl synthase OS=Xanthobacter autotrophicus (str... [more]
LIPA_SILST4.376e-1951.69Lipoyl synthase OS=Silicibacter sp. (strain TM1040... [more]
LIPA_PASMU4.376e-1952.75Lipoyl synthase OS=Pasteurella multocida GN=lipA P... [more]
LIPA_DIAST4.376e-1952.75Lipoyl synthase OS=Diaphorobacter sp. (strain TPSY... [more]
LIPA_ACISJ4.376e-1952.75Lipoyl synthase OS=Acidovorax sp. (strain JS42) GN... [more]
LIPA_RICPR5.715e-1951.69Lipoyl synthase OS=Rickettsia prowazekii GN=lipA P... [more]
LIPA_PSEU57.464e-1951.65Lipoyl synthase OS=Pseudomonas stutzeri (strain A1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-807 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bp
GCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTTTTG
CAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGCCTA
CTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTGATT
ACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTTTGC
TCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTGAAG
CATTGGTTCCTGATTTTCGCGGAAA
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