CF504319

Overview
NameCF504319
Unique NameCF504319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL11_MOUSE (ADP-ribosylation factor-like protein 11 OS=Mus musculus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.100e-21
Identity = 46/100 (46.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 383
            +   +++M+GLD+AGKTTILYKLK  ++V T+PT+GFNVE +E   ++S T+WD+GGQ ++R  W+ Y +    L++V+DS D  R+ EA  EL  +L +
Sbjct:   10 KAEAQVVMMGLDSAGKTTILYKLKGNQLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLED 109          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL11_RAT (ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.743e-21
Identity = 46/98 (46.94%), Postives = 69/98 (70.41%), Query Frame = 3
Query:   93 RCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 383
            + +++M+GLD AGKTTILYKLK   +V T+PT+GFNVE +E   ++S T+WD+GGQ ++R  W+ Y +    L++V+DS D  R+ EA  EL  +L +
Sbjct:   10 KAQVVMLGLDCAGKTTILYKLKGNRLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLED 107          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL11_HUMAN (ADP-ribosylation factor-like protein 11 OS=Homo sapiens GN=ARL11 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.743e-21
Identity = 46/100 (46.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 383
            +   +++M+GLD+AGKTT+LYKLK  ++V T+PT+GFNVE ++   ++S T+WDVGGQ  +R  W+ Y + T  L++V+DS D  R+ E+  EL  +LN+
Sbjct:   10 KAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGHVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLND 109          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL11_BOVIN (ADP-ribosylation factor-like protein 11 OS=Bos taurus GN=ARL11 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.743e-21
Identity = 46/100 (46.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 383
            R   +++M+GLD+AGKTT+LY+LK  ++V T+PT+GFNVE +E   ++S T+WDVGGQ ++R  W+ + + T  L++V+DS D  R+ EA  EL  +L++
Sbjct:   10 RAEAQVVMMGLDSAGKTTLLYRLKGYQLVETLPTVGFNVEPLEEPGHVSLTLWDVGGQSQLRASWKDHLEGTDILVYVLDSTDEARLPEAVAELREVLDD 109          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL5C_MOUSE (ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.361e-20
Identity = 43/93 (46.24%), Postives = 65/93 (69.89%), Query Frame = 3
Query:   99 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 377
            ++++VGLD AGKTTILY+    E+V T  TIG NVE +  +   F +WD+GGQ+ +R  W  Y+ N + +I V+DS DR+R++  R+EL++ML
Sbjct:   18 KVIIVGLDNAGKTTILYQFLTNEVVHTCSTIGSNVEEIVLRKTHFLMWDLGGQEALRSTWDTYYSNAEFVILVIDSTDRNRLLTTREELYKML 110          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARD1_CAEEL (Putative GTP-binding protein ard-1 homolog OS=Caenorhabditis elegans GN=arc-1 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.361e-20
Identity = 44/98 (44.90%), Postives = 68/98 (69.39%), Query Frame = 3
Query:   99 RILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 383
            R++++GLD AGKT+I+ +LK  ++ T +   PTIGFN+ET+ YKN     WDVGG  K+R LW+HY+ N Q + +V+D    +R  EA  EL+R++++
Sbjct:  371 RVVLLGLDGAGKTSIVRRLKKVQMDTVMAPHPTIGFNIETIHYKNYRLNFWDVGGLPKLRHLWKHYYSNAQAIFYVIDGYAVERFSEAIKELNRVMSD 468          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL6_PONAB (ADP-ribosylation factor-like protein 6 OS=Pongo abelii GN=ARL6 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.322e-20
Identity = 47/105 (44.76%), Postives = 72/105 (68.57%), Query Frame = 3
Query:   81 LPRKRCRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            L +K   +L +GLD +GKTTI+ KLK     +   +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  +
Sbjct:   13 LKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPD 117          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL6_HUMAN (ADP-ribosylation factor-like protein 6 OS=Homo sapiens GN=ARL6 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.322e-20
Identity = 47/105 (44.76%), Postives = 72/105 (68.57%), Query Frame = 3
Query:   81 LPRKRCRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            L +K   +L +GLD +GKTTI+ KLK     +   +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  +
Sbjct:   13 LKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPD 117          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.322e-20
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +  RIL++GLD AGKTTIL +L   ++    PT GFNV+TV    +I   VWD+GGQ  IRP W +Y++N   LIFV+DSND+ R  E   EL  +L+E++
Sbjct:   16 REIRILLLGLDNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEK 116          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL6_MOUSE (ADP-ribosylation factor-like protein 6 OS=Mus musculus GN=Arl6 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.033e-20
Identity = 46/105 (43.81%), Postives = 73/105 (69.52%), Query Frame = 3
Query:   81 LPRKRCRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            L +K   +L +GLD +GKTTI+ KLK     +   +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY+++ Q +IFV+DS+D+ R+V A++EL  +LN  +
Sbjct:   13 LKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKDGQAIIFVIDSSDKLRMVVAKEELDTLLNHPD 117          
The following BLAST results are available for this feature:
BLAST of CF504319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL11_MOUSE2.100e-2146.00ADP-ribosylation factor-like protein 11 OS=Mus mus... [more]
ARL11_RAT2.743e-2146.94ADP-ribosylation factor-like protein 11 OS=Rattus ... [more]
ARL11_HUMAN2.743e-2146.00ADP-ribosylation factor-like protein 11 OS=Homo sa... [more]
ARL11_BOVIN2.743e-2146.00ADP-ribosylation factor-like protein 11 OS=Bos tau... [more]
ARL5C_MOUSE1.361e-2046.24ADP-ribosylation factor-like protein 5C OS=Mus mus... [more]
ARD1_CAEEL1.361e-2044.90Putative GTP-binding protein ard-1 homolog OS=Caen... [more]
ARL6_PONAB2.322e-2044.76ADP-ribosylation factor-like protein 6 OS=Pongo ab... [more]
ARL6_HUMAN2.322e-2044.76ADP-ribosylation factor-like protein 6 OS=Homo sap... [more]
ARL3_CAEEL2.322e-2048.51ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]
ARL6_MOUSE3.033e-2043.81ADP-ribosylation factor-like protein 6 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-808 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504319 ID=CF504319; Name=CF504319; organism=Citrus sinensis; type=EST; length=389bp
CCTCTCTCTCTCGCGTTCTCTGAAGTGATCCCCAGCTGGAAGAATGGGGC
TGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCCG
AATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACA
AGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAAT
GTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGG
TGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTC
AAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAA
GCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAG
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