CF504319

Overview
NameCF504319
Unique NameCF504319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.961e-20
Identity = 44/103 (42.72%), Postives = 69/103 (66.99%), Query Frame = 3
Query:   81 LPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            L  +  R+L++GLD AGKTTIL  L   ++    PT GF + T+E + + FT+WD+GGQ  +R  W++YF++T+ +I+VVDS D  R+ E R+ L  +L E++
Sbjct:   12 LKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEK 114          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL6_BOVIN (ADP-ribosylation factor-like protein 6 OS=Bos taurus GN=ARL6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.757e-20
Identity = 45/105 (42.86%), Postives = 72/105 (68.57%), Query Frame = 3
Query:   81 LPRKRCRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            L +K   +L +GLD +GKTTI+ KLK     +   +PTIGF+++  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+D+ R+V A++EL  +LN  +
Sbjct:   13 LKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIQKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPD 117          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF_ENCCU (ADP-ribosylation factor OS=Encephalitozoon cuniculi GN=ARF-1 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.274e-18
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  102 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 380
            I M+GLD AGKTT+L  L+ GE+  T+PT+GFN E V   ++ F VWD+GGQ+     W  Y     G+I++VD  D  R  ++ +EL R+LN
Sbjct:   28 ITMIGLDGAGKTTLLLYLQTGEVHQTVPTLGFNCENVTLGSMKFQVWDIGGQNSFMRFWHQYINEGCGIIYMVDCADPQRFGKSGEELWRILN 120          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL5C_HUMAN (Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  102 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 377
            +++VGLD  GKTTILY+    E+V   PTIG NVE +      F +WD+   + +  +W  Y+ NT+ +I V+DS DRDR++  R+EL++ML
Sbjct:   19 VIIVGLDNEGKTTILYRFLTNEVVHMCPTIGSNVEEIILPKTHFFMWDIVRPEALSFIWNTYYSNTEFIILVIDSTDRDRLLTTREELYKML 110          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 3
Query:   81 LPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            L  K  +IL +GLD AGKTT+L+ LK   + T  PT+    E +    + FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  +L+ +E
Sbjct:   16 LAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEE 118          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.139e-17
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 3
Query:   69 SAGSLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            S+  L  K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D DR  EA+ EL  +L+ +E
Sbjct:   12 SSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEE 118          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 39/101 (38.61%), Postives = 70/101 (69.31%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI-FVVDSNDRDRIVEARDELHRMLNED 386
            +K  +I+++GL  AGKTT+L+ L  G + + IPT+  N E+  Y N++F  +D+GGQ  +R LW+ Y  +++ +I F+VDS+D + I+E++ E+H +L ++
Sbjct:   18 KKEAKIVIIGLGNAGKTTLLHLLVTGSLKSHIPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDE 118          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 3
Query:   69 SAGSLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            S+  L  K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LWR YF    G++F+VD+ D +R+ E++ EL  +L  +E
Sbjct:    8 SSLGLMNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEE 114          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:   81 LPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 380
            L  K  ++L +GLD AGKTT+L+ LK   + T  PT+    E +   N+ FT +D+GG  + R LWR YF    G++F+VDS D +R  E++ EL  +L+
Sbjct:   16 LMNKSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLS 115          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 3
Query:   69 SAGSLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            S+  L  K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EA+ EL  +L+ +E
Sbjct:   12 SSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEE 118          
The following BLAST results are available for this feature:
BLAST of CF504319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL_SCHPO3.961e-2042.72ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
ARL6_BOVIN6.757e-2042.86ADP-ribosylation factor-like protein 6 OS=Bos taur... [more]
ARF_ENCCU1.274e-1845.16ADP-ribosylation factor OS=Encephalitozoon cunicul... [more]
ARL5C_HUMAN6.324e-1843.48Putative ADP-ribosylation factor-like protein 5C O... [more]
SAR1_USTMA1.079e-1740.78Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_MAGGR3.139e-1739.25Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]
SAR1B_DICDI4.099e-1738.61GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
SAR1_PHANO9.132e-1738.32Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1_CRYNE9.132e-1741.00Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_CHAGB9.132e-1738.32Small COPII coat GTPase SAR1 OS=Chaetomium globosu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-808 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504319 ID=CF504319; Name=CF504319; organism=Citrus sinensis; type=EST; length=389bp
CCTCTCTCTCTCGCGTTCTCTGAAGTGATCCCCAGCTGGAAGAATGGGGC
TGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCCG
AATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACA
AGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAAT
GTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGG
TGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTC
AAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAA
GCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAG
back to top