CF504319

Overview
NameCF504319
Unique NameCF504319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.558e-16
Identity = 39/103 (37.86%), Postives = 63/103 (61.17%), Query Frame = 3
Query:   81 LPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            L  K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D +R+ EA+ E+  +L+ +E
Sbjct:   16 LLNKHGKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEE 118          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.034e-16
Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 3
Query:   81 LPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            L  K  +IL +GLD AGKTT+L  LK G + + +PT     E +   NI F  +D+GG +  R LW+ Y+ +   +++++DS+ +DR VE++ EL  +L+ DE
Sbjct:   16 LYNKNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDE 118          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.657e-16
Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = 3
Query:   69 SAGSLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            S+  L  K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ F  +D+GG  + R +WR YF +  G++F+VD+ D +R  EA+ EL  +L+ +E
Sbjct:   12 SSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFNTFDLGGHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEE 118          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL6_CAEBR (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis briggsae GN=arl-6 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.657e-16
Identity = 47/116 (40.52%), Postives = 71/116 (61.21%), Query Frame = 3
Query:   48 G*LSQSCSAGSLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            G LS   +   + +K   I++VGLD +GKTTIL +LK  E  +   +PT+G  V     +N+SF  +D+ GQ K R  W  YF ++QG+IFV+DS+DR R+   +DEL  +L+  +
Sbjct:    2 GFLSSLSNLFGMGKKDVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRVRMELLKDELWLVLDHKD 117          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.470e-16
Identity = 44/100 (44.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   NI FT +D+GG  + R LW+ YF    G++F+VDS D DR  EAR EL  + N  E
Sbjct:   21 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITE 120          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.532e-16
Identity = 35/100 (35.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 383
            ++   + +VGL  +GKTT++  +  G  +  TIPTIGFN++ V   N++  +WD+GGQ + R +W  Y +    ++FVVDS DR++  +++  L  ++N+
Sbjct:   17 KQEMELTLVGLQGSGKTTLVNVISNGGFIEDTIPTIGFNMKKVTKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINK 116          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL6_CAEEL (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis elegans GN=arl-6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.532e-16
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 3
Query:   48 G*LSQSCSAGSLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            G  S   S   L +K   I++VGLD +GKTTIL +LK  E  +   +PT+G  V     +N+SF  +D+ GQ K R  W  YF ++QG+IFV+DS+DR R+   +DEL  ++   +
Sbjct:    2 GFFSSLSSLFGLGKKDVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRLRMELLKDELMMVMEHKD 117          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL3_PONAB (ADP-ribosylation factor-like protein 3 OS=Pongo abelii GN=ARL3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.919e-16
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 3
Query:   78 SLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 299
            S P +  RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP W++YF+NT
Sbjct:   12 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENT 85          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL8B_RAT (ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.730e-16
Identity = 33/102 (32.35%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            ++   + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR++I  +R+ELH +L++ +
Sbjct:   18 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQ 119          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL8B_MOUSE (ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.730e-16
Identity = 33/102 (32.35%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            ++   + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR++I  +R+ELH +L++ +
Sbjct:   18 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQ 119          
The following BLAST results are available for this feature:
BLAST of CF504319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
SAR1_NEUCR1.558e-1637.86Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1A_DICDI2.034e-1638.83GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]
SAR1_TRIRE2.657e-1637.38Small COPII coat GTPase sar1 OS=Trichoderma reesei... [more]
ARL6_CAEBR2.657e-1640.52ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
SAR1_CANGA3.470e-1644.00Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
ARL8_DICDI4.532e-1635.00ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
ARL6_CAEEL4.532e-1640.52ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL3_PONAB5.919e-1650.00ADP-ribosylation factor-like protein 3 OS=Pongo ab... [more]
ARL8B_RAT7.730e-1632.35ADP-ribosylation factor-like protein 8B OS=Rattus ... [more]
ARL8B_MOUSE7.730e-1632.35ADP-ribosylation factor-like protein 8B OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-808 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504319 ID=CF504319; Name=CF504319; organism=Citrus sinensis; type=EST; length=389bp
CCTCTCTCTCTCGCGTTCTCTGAAGTGATCCCCAGCTGGAAGAATGGGGC
TGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCCG
AATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACA
AGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAAT
GTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGG
TGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTC
AAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAA
GCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAG
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