CF504319

Overview
NameCF504319
Unique NameCF504319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARFRP_RAT (ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.591e-13
Identity = 37/106 (34.91%), Postives = 63/106 (59.43%), Query Frame = 3 
Query:  102 ILMVGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNED 386
            IL++GLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E+++   ++++ +
Sbjct:   20 ILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSE 122
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARFRP_MOUSE (ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.591e-13
Identity = 37/106 (34.91%), Postives = 63/106 (59.43%), Query Frame = 3 
Query:  102 ILMVGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNED 386
            IL++GLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E+++   ++++ +
Sbjct:   20 ILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSE 122
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARFRP_BOVIN (ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.591e-13
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 3 
Query:  102 ILMVGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNED 386
            +L++GLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E++    +M+  +
Sbjct:   20 VLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVTSE 122
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 3 
Query:   81 LPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            L +K+  I+ VGLD AGK+T+L  LK     T  PT     + +   +I F  +D+GG +  R LW  Y  N+ G++F+VDS D  R  E+R  L  +L+  +
Sbjct:   16 LYKKKATIVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHD 118
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13
Identity = 35/100 (35.00%), Postives = 59/100 (59.00%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNED 386
            +K  +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL  +L++D
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDD 117
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARFRP_PONAB (ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 3 
Query:  102 ILMVGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNED 386
            IL++GLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E++    +++  +
Sbjct:   20 ILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSE 122
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARFRP_HUMAN (ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 3 
Query:  102 ILMVGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNED 386
            IL++GLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E++    +++  +
Sbjct:   20 ILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSE 122
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.000e-13
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNED 386
            +K  +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL  +L+++
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDE 117
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.000e-13
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNED 386
            +K  +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL  +L+++
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDE 117
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.000e-13
Identity = 33/98 (33.67%), Postives = 59/98 (60.20%), Query Frame = 3 
Query:   84 PRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 377
            P ++  ++MVGLD AGKT     ++        PT+GF+   +       T++D+GG  +IR +W++Y+  + G+IFVVDS+D +R+ E ++ +  +L
Sbjct:   18 PVRKVTLVMVGLDNAGKTATAKGIQGEHPEDVAPTVGFSKIDLRQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVL 115
The following BLAST results are available for this feature:
BLAST of CF504319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARFRP_RAT3.591e-1334.91ADP-ribosylation factor-related protein 1 OS=Rattu... [more]
ARFRP_MOUSE3.591e-1334.91ADP-ribosylation factor-related protein 1 OS=Mus m... [more]
ARFRP_BOVIN3.591e-1334.91ADP-ribosylation factor-related protein 1 OS=Bos t... [more]
SAR1_GIALA4.690e-1336.89GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
SAR1B_BRACM4.690e-1335.00GTP-binding protein SAR1B OS=Brassica campestris G... [more]
ARFRP_PONAB4.690e-1334.91ADP-ribosylation factor-related protein 1 OS=Pongo... [more]
ARFRP_HUMAN4.690e-1334.91ADP-ribosylation factor-related protein 1 OS=Homo ... [more]
SAR1A_BRACM8.000e-1334.00GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1A_ARATH8.000e-1334.00GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
AR13B_MOUSE8.000e-1333.67ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-808 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504319 ID=CF504319; Name=CF504319; organism=Citrus sinensis; type=EST; length=389bp
CCTCTCTCTCTCGCGTTCTCTGAAGTGATCCCCAGCTGGAAGAATGGGGC
TGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCCG
AATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACA
AGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAAT
GTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGG
TGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTC
AAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAA
GCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAG
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