CF504330

Overview
NameCF504330
Unique NameCF504330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPC2_DICDI (DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium discoideum GN=polr3b PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 55/134 (41.04%), Postives = 72/134 (53.73%), Query Frame = 2
Query:   11 LDDDGFPFIGANLQCGDIVIGKYA---------------DSGADHS-IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364
            LD DG    G   Q G I++ KY+               DS    S +  K+     + KV+L+S DD +    + +R  R P LGDKFSS HGQKGV G +  QE+ PF+  GI PDI++NPH FPSR T G+
Sbjct: 1286 LDSDGIAKPGELAQKGQILVNKYSPLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGK 1419          
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPA2_NEUCR (DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa GN=acr-2 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.380e-18
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 2
Query:    5 DSLDDDGFPFIGANLQCGDIVIGKYADS-----------GADHSIKLKHTERGMVQKVVLSSNDDGKN---FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 361
            D LD+DG P +G  L+ GD++   +  S           G  H  + K +E   V++V +   D+G        + LR  RSP +GDKFSS HGQKGVL       + PF+  GI PD++INPHAFPSR T G
Sbjct:  844 DMLDNDGLPRVGRLLREGDVICAWHTVSADYNGQLVNRDGVTHYERYKDSEDAFVEEVRVIGADNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIG 976          
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPA2_ASHGO (DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii GN=RPA2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.181e-17
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 2
Query:    2 VDSLDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHT-ERGMVQKVVLSSNDDGK----NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 361
            ++ LD+DG P IG+ ++ GD +   + D+     IK  H+ E   +++V L  ++  K     +  +  R  R P +GDKFSS HGQKGV        + PF+  GI PD++INPHAFPSR T G
Sbjct:  832 LEKLDEDGLPIIGSYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRMTIG 956          
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPC2_MOUSE (DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus GN=Polr3b PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.542e-17
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 2
Query:   95 DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364
            D  I  K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH FPSR T G+
Sbjct:  853 DVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGK 942          
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPC2_HUMAN (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens GN=POLR3B PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.542e-17
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 2
Query:   95 DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364
            D  I  K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH FPSR T G+
Sbjct:  853 DVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGK 942          
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPA2_YEAST (DNA-directed RNA polymerase I subunit RPA2 OS=Saccharomyces cerevisiae GN=RPA2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.015e-17
Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 2
Query:    2 VDSLDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHT-ERGMVQKVVLSSNDDGK--NFSVVSL--RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 361
            ++ LD+DG P+IG  ++ GD +   + D+     IK  H+ E   +++V L  ++  K      VS+  R  R+P +GDKFSS HGQKGV        + PF+  GI PDI+INPHAFPSR T G
Sbjct:  837 LEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIG 961          
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPC2_DROME (DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster GN=RpIII128 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 51/135 (37.78%), Postives = 70/135 (51.85%), Query Frame = 2
Query:    5 DSLDDDGFPFIGANLQCGDIVIGKYADSGADHS---------------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364
            D LD DG    G  +Q   I+I K   +    +               I  K  E   +++V++S+N +      + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PD+++NPH FPSR T G+
Sbjct:  814 DVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGK 948          
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPA2_DICDI (DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium discoideum GN=polr1b PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15
Identity = 50/125 (40.00%), Postives = 66/125 (52.80%), Query Frame = 2
Query:   11 LDDDGFPFIGANLQCGDIVIGKYADSGADHSIK-LKHTERGMVQKVVLSSNDDGK-------NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 361
            +D DG PF+G  ++ G+        S      K  K  E   ++ V +    +G        N   V LR  R+P +GDKFSS HGQKGVL  L  + N PFT  G+ PD++INP+AFPSR T G
Sbjct:  803 IDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIG 927          
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPO2_MIMIV (DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga mimivirus GN=RPO2 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 52/169 (30.77%), Postives = 81/169 (47.93%), Query Frame = 2
Query:    5 DSLDDDGFPFIGANLQCGDIVIG-------------KYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAI 472
            D L ++G+  +   ++ GD+VIG             +Y D+ + +    K    G V KV+   N+DG     + +R  R P +GDKFSS  GQKG +G+   + +  F+  G++PDI+INP+  P R T GQ                   G+   ATPF +  ++AI
Sbjct:  866 DKLSEEGYAKVETVIRDGDVVIGVVNPKPTAREDEKQYKDASSIY----KSLIPGAVDKVITEVNNDGYPIIKMRIRSERIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQ------LIECLLGKLCAVKGVYGDATPFTSVDLNAI 1024          
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPB2_IIV3 (Probable DNA-directed RNA polymerase II subunit RPB2 homolog OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.556e-14
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 2
Query:   20 DGFPFIGANLQCGDIVIGKYA-------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364
            DG   +   ++ GD++I K         +   D S+ ++H E G V ++V  +  DG     V + Q+R+P +GDKF S   QKG  G +  QE+ PFT  G+ PDI+INP+  PSR T  Q
Sbjct:  829 DGIVRLRQRVKKGDVLICKVTIKNKNQDEKLVDSSVIVQHGEEGYVDRIV-DNVIDGCRIVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIFPQEDMPFTASGMTPDIIINPNCIPSRMTINQ 949          
The following BLAST results are available for this feature:
BLAST of CF504330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RPC2_DICDI2.811e-1941.04DNA-directed RNA polymerase III subunit rpc2 OS=Di... [more]
RPA2_NEUCR2.380e-1840.60DNA-directed RNA polymerase I subunit RPA2 OS=Neur... [more]
RPA2_ASHGO1.181e-1739.20DNA-directed RNA polymerase I subunit RPA2 OS=Ashb... [more]
RPC2_MOUSE1.542e-1748.89DNA-directed RNA polymerase III subunit RPC2 OS=Mu... [more]
RPC2_HUMAN1.542e-1748.89DNA-directed RNA polymerase III subunit RPC2 OS=Ho... [more]
RPA2_YEAST2.015e-1741.60DNA-directed RNA polymerase I subunit RPA2 OS=Sacc... [more]
RPC2_DROME2.631e-1737.78DNA-directed RNA polymerase III subunit RPC2 OS=Dr... [more]
RPA2_DICDI1.444e-1540.00DNA-directed RNA polymerase I subunit rpa2 OS=Dict... [more]
RPO2_MIMIV5.486e-1530.77DNA-directed RNA polymerase subunit 2 OS=Acanthamo... [more]
RPB2_IIV33.556e-1436.89Probable DNA-directed RNA polymerase II subunit RP... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-819 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504330 ID=CF504330; Name=CF504330; organism=Citrus sinensis; type=EST; length=475bp
CGTTGACAGCCTAGATGATGATGGCTTTCCCTTCATTGGTGCTAACCTCC
AGTGTGGTGACATCGTGATTGGAAAGTATGCGGATTCTGGGGCTGATCAC
AGTATAAAACTGAAGCACACTGAACGGGGAATGGTTCAGAAAGTCGTGCT
ATCTTCTAATGATGATGGAAAGAATTTTTCTGTGGTATCTCTCAGACAGG
TTCGTTCCCCATGTCTTGGAGACAAGTTCTCTAGCATGCATGGGCAGAAA
GGTGTTTTGGGCTTTTTGGAGTCTCAAGAAAATTTCCCTTTTACCATACA
AGGCATAGTTCCAGACATTGTAATAAATCCACATGCTTTTCCTTCAAGGC
AAACTCCTGGTCAACTTTTAGAGGCTGCTTTAGGAAAGGGGATTGCTGCT
TTAGGAAAGGGGATTTGCAGTGGCTTGAAAAGATATGCCACTCCTTTTGC
TACTCCCTCTGTTGATGCAATCACT
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