CF504330
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPC2_DICDI (DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium discoideum GN=polr3b PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19 Identity = 55/134 (41.04%), Postives = 72/134 (53.73%), Query Frame = 2 Query: 11 LDDDGFPFIGANLQCGDIVIGKYA---------------DSGADHS-IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364 LD DG G Q G I++ KY+ DS S + K+ + KV+L+S DD + + +R R P LGDKFSS HGQKGV G + QE+ PF+ GI PDI++NPH FPSR T G+ Sbjct: 1286 LDSDGIAKPGELAQKGQILVNKYSPLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGK 1419
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPA2_NEUCR (DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa GN=acr-2 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 2.380e-18 Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 2 Query: 5 DSLDDDGFPFIGANLQCGDIVIGKYADS-----------GADHSIKLKHTERGMVQKVVLSSNDDGKN---FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 361 D LD+DG P +G L+ GD++ + S G H + K +E V++V + D+G + LR RSP +GDKFSS HGQKGVL + PF+ GI PD++INPHAFPSR T G Sbjct: 844 DMLDNDGLPRVGRLLREGDVICAWHTVSADYNGQLVNRDGVTHYERYKDSEDAFVEEVRVIGADNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIG 976
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPA2_ASHGO (DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii GN=RPA2 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.181e-17 Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 2 Query: 2 VDSLDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHT-ERGMVQKVVLSSNDDGK----NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 361 ++ LD+DG P IG+ ++ GD + + D+ IK H+ E +++V L ++ K + + R R P +GDKFSS HGQKGV + PF+ GI PD++INPHAFPSR T G Sbjct: 832 LEKLDEDGLPIIGSYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRMTIG 956
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPC2_MOUSE (DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus GN=Polr3b PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 1.542e-17 Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 2 Query: 95 DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364 D I K ++KV++SSN + + LRQ R P +GDKFSS HGQKGV G + QE+ PF GI PDI++NPH FPSR T G+ Sbjct: 853 DVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGK 942
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPC2_HUMAN (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens GN=POLR3B PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 1.542e-17 Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 2 Query: 95 DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364 D I K ++KV++SSN + + LRQ R P +GDKFSS HGQKGV G + QE+ PF GI PDI++NPH FPSR T G+ Sbjct: 853 DVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGK 942
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPA2_YEAST (DNA-directed RNA polymerase I subunit RPA2 OS=Saccharomyces cerevisiae GN=RPA2 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.015e-17 Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 2 Query: 2 VDSLDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHT-ERGMVQKVVLSSNDDGK--NFSVVSL--RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 361 ++ LD+DG P+IG ++ GD + + D+ IK H+ E +++V L ++ K VS+ R R+P +GDKFSS HGQKGV + PF+ GI PDI+INPHAFPSR T G Sbjct: 837 LEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIG 961
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPC2_DROME (DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster GN=RpIII128 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17 Identity = 51/135 (37.78%), Postives = 70/135 (51.85%), Query Frame = 2 Query: 5 DSLDDDGFPFIGANLQCGDIVIGKYADSGADHS---------------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364 D LD DG G +Q I+I K + + I K E +++V++S+N + + LRQ R P +GDKFSS HGQKGV G + QE+ PF GI PD+++NPH FPSR T G+ Sbjct: 814 DVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGK 948
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPA2_DICDI (DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium discoideum GN=polr1b PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15 Identity = 50/125 (40.00%), Postives = 66/125 (52.80%), Query Frame = 2 Query: 11 LDDDGFPFIGANLQCGDIVIGKYADSGADHSIK-LKHTERGMVQKVVLSSNDDGK-------NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 361 +D DG PF+G ++ G+ S K K E ++ V + +G N V LR R+P +GDKFSS HGQKGVL L + N PFT G+ PD++INP+AFPSR T G Sbjct: 803 IDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIG 927
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPO2_MIMIV (DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga mimivirus GN=RPO2 PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15 Identity = 52/169 (30.77%), Postives = 81/169 (47.93%), Query Frame = 2 Query: 5 DSLDDDGFPFIGANLQCGDIVIG-------------KYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAI 472 D L ++G+ + ++ GD+VIG +Y D+ + + K G V KV+ N+DG + +R R P +GDKFSS GQKG +G+ + + F+ G++PDI+INP+ P R T GQ G+ ATPF + ++AI Sbjct: 866 DKLSEEGYAKVETVIRDGDVVIGVVNPKPTAREDEKQYKDASSIY----KSLIPGAVDKVITEVNNDGYPIIKMRIRSERIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQ------LIECLLGKLCAVKGVYGDATPFTSVDLNAI 1024
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPB2_IIV3 (Probable DNA-directed RNA polymerase II subunit RPB2 homolog OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.556e-14 Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 2 Query: 20 DGFPFIGANLQCGDIVIGKYA-------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364 DG + ++ GD++I K + D S+ ++H E G V ++V + DG V + Q+R+P +GDKF S QKG G + QE+ PFT G+ PDI+INP+ PSR T Q Sbjct: 829 DGIVRLRQRVKKGDVLICKVTIKNKNQDEKLVDSSVIVQHGEEGYVDRIV-DNVIDGCRIVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIFPQEDMPFTASGMTPDIIINPNCIPSRMTINQ 949 The following BLAST results are available for this feature:
BLAST of CF504330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504330 ID=CF504330; Name=CF504330; organism=Citrus sinensis; type=EST; length=475bpback to top |