CF504330

Overview
NameCF504330
Unique NameCF504330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPOB_LACPL (DNA-directed RNA polymerase subunit beta OS=Lactobacillus plantarum GN=rpoB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 42/148 (28.38%), Postives = 68/148 (45.95%), Query Frame = 2 
Query:    8 SLDDDGFPFIGANLQCGDIVIGKYADSGA----------------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSV-------VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364
            +LD+DG   IGA ++ GDI++GK    G                       D S+++ H   G++Q V + + ++G   S        V + Q R   +GDK +  HG KG +  +  +E+ P+   G   DI+++P   PSR   GQ
Sbjct:  823 NLDEDGIIRIGAEVKDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTRENGDELSPGVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSIVVPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQ 970
[Close]
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPOB_CORGL (DNA-directed RNA polymerase subunit beta OS=Corynebacterium glutamicum GN=rpoB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 47/147 (31.97%), Postives = 65/147 (44.22%), Query Frame = 2 
Query:   11 LDDDGFPFIGANLQCGDIVIGKYADSGA----------------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSV-------VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364
            LDD G   IGA+++ GDI++GK    G                       D S+K+ H E G V  V   S +D  + +        + + Q R    GDK +  HG KGV+G +  QE+ PF   G   DI++N H  P R   GQ
Sbjct:  772 LDDRGIVRIGADVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGETGKVIGVRHFSREDDDDLAPGVNEMIRIYVAQKRKIQDGDKLAGRHGNKGVVGKILPQEDMPFLPDGTPVDIILNTHGVPRRMNIGQ 918
[Close]
BLAST of CF504330 vs. ExPASy Swiss-Prot
Match: RPOB_CORGB (DNA-directed RNA polymerase subunit beta OS=Corynebacterium glutamicum (strain R) GN=rpoB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 47/147 (31.97%), Postives = 65/147 (44.22%), Query Frame = 2 
Query:   11 LDDDGFPFIGANLQCGDIVIGKYADSGA----------------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSV-------VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 364
            LDD G   IGA+++ GDI++GK    G                       D S+K+ H E G V  V   S +D  + +        + + Q R    GDK +  HG KGV+G +  QE+ PF   G   DI++N H  P R   GQ
Sbjct:  772 LDDRGIVRIGADVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGETGKVIGVRHFSREDDDDLAPGVNEMIRIYVAQKRKIQDGDKLAGRHGNKGVVGKILPQEDMPFLPDGTPVDIILNTHGVPRRMNIGQ 918
The following BLAST results are available for this feature:
BLAST of CF504330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RPOB_LACPL8.198e-1128.38DNA-directed RNA polymerase subunit beta OS=Lactob... [more]
RPOB_CORGL8.198e-1131.97DNA-directed RNA polymerase subunit beta OS=Coryne... [more]
RPOB_CORGB8.198e-1131.97DNA-directed RNA polymerase subunit beta OS=Coryne... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-819 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504330 ID=CF504330; Name=CF504330; organism=Citrus sinensis; type=EST; length=475bp
CGTTGACAGCCTAGATGATGATGGCTTTCCCTTCATTGGTGCTAACCTCC
AGTGTGGTGACATCGTGATTGGAAAGTATGCGGATTCTGGGGCTGATCAC
AGTATAAAACTGAAGCACACTGAACGGGGAATGGTTCAGAAAGTCGTGCT
ATCTTCTAATGATGATGGAAAGAATTTTTCTGTGGTATCTCTCAGACAGG
TTCGTTCCCCATGTCTTGGAGACAAGTTCTCTAGCATGCATGGGCAGAAA
GGTGTTTTGGGCTTTTTGGAGTCTCAAGAAAATTTCCCTTTTACCATACA
AGGCATAGTTCCAGACATTGTAATAAATCCACATGCTTTTCCTTCAAGGC
AAACTCCTGGTCAACTTTTAGAGGCTGCTTTAGGAAAGGGGATTGCTGCT
TTAGGAAAGGGGATTTGCAGTGGCTTGAAAAGATATGCCACTCCTTTTGC
TACTCCCTCTGTTGATGCAATCACT
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