CF504347

Overview
NameCF504347
Unique NameCF504347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9537 contig Csv1_Contig9537:476..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.208e-30
Identity = 61/82 (74.39%), Postives = 68/82 (82.93%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQ+ +LEE+FKEH+TLNP           LR RQVEVWFQNRRARTKLKQTEVDCE+LKRCC+NLTEENRRLQKE
Sbjct:  163 KKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKE 244
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.606e-29
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRL+K+QSA+LE+ F+EH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE LTEENRRLQ+E
Sbjct:  127 KKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRE 208
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.606e-29
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRL+K+QSA+LE+ F+EH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE LTEENRRLQ+E
Sbjct:  127 KKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRE 208
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.097e-29
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSK+Q+ +LEE+FKEH+TLNP           LR RQVEVWFQNRRARTKLKQTEVDCE+LKRCCENLT+ENRRLQKE
Sbjct:  162 KKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKE 243
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.739e-29
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQ+A+LE++FKEHNTLNP           L+PRQVEVWFQNRRARTKLKQTEVDCE LKRCCE LT+ENRRL +E
Sbjct:  157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRE 238
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.739e-29
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQ+A+LE++FKEHNTLNP           L+PRQVEVWFQNRRARTKLKQTEVDCE LKRCCE LT+ENRRL +E
Sbjct:  157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRE 238
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.102e-29
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSK+QSA+LE+ FKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE LKRCCE LTEENRRL +E
Sbjct:   94 KKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRE 175
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.102e-29
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSK+QSA+LE+ FKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE LKRCCE LTEENRRL +E
Sbjct:   94 KKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRE 175
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.359e-28
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRL+K QSA+LE++FK H+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCEFLK+CCE LT+ENRRLQKE
Sbjct:  126 KKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKE 207
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.319e-28
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRL+K QSA+LEESFK+H+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCEFLK+CCE L +EN RLQKE
Sbjct:  113 KKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKE 194
The following BLAST results are available for this feature:
BLAST of CF504347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ATHB4_ARATH7.208e-3074.39Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HOX19_ORYSJ1.606e-2973.17Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI1.606e-2973.17Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HAT3_ARATH2.097e-2973.17Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HOX1_ORYSJ2.739e-2971.95Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX1_ORYSI2.739e-2971.95Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX15_ORYSJ6.102e-2973.17Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX15_ORYSI6.102e-2973.17Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HAT22_ARATH1.359e-2871.95Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HAT9_ARATH2.319e-2871.95Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-836 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504347 ID=CF504347; Name=CF504347; organism=Citrus sinensis; type=EST; length=362bp
TTTCGAGCGTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAG
CTCGAAATGGAGAGAGCTTGCTCTCGTGGTATCAGCGACGAAGAGGATGG
TGACACCTTCAAGAAAGAAGCCTGAGACTTTCTAAAGATCAGTCAGCCAT
TCTTGAAGAGAGCTTCAAAGAGCACAACACTCTCAACCCAAAGCAAAAGT
TGGCGTTGGCAAAGCAGCTTGGTCTCAGACCTAGACAGGTGGAAGTGTGG
TTCCAGAACAGAAGGGCAAGGACCAAATTGAAGCAAACTGAGGTTGACTG
CGAATTCTTGAAGAGATGCTGTGAGAATCTGACGGAGGAGAACAGGCGGT
TGCAGAAAGAAG
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