CF504347

Overview
NameCF504347
Unique NameCF504347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSJ (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. japonica GN=HOX7 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.955e-28
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSK+QS+ LE+SFKEH+TL P           LRPRQVEVWFQNRRARTKLKQTEVDCE LKRCCE LT ENRRLQ+E
Sbjct:  153 KKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQRE 234
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSI (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. indica GN=HOX7 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.955e-28
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSK+QS+ LE+SFKEH+TL P           LRPRQVEVWFQNRRARTKLKQTEVDCE LKRCCE LT ENRRLQ+E
Sbjct:  153 KKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQRE 234
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.746e-28
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQ+A+LEE FK H+TLNP          GLRPRQVEVWFQNRRARTKLKQTEVDCE+LKR CE L +EN+RL+KE
Sbjct:  115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKE 196
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.746e-28
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQ+A+LEE FK H+TLNP          GLRPRQVEVWFQNRRARTKLKQTEVDCE+LKR CE L +EN+RL+KE
Sbjct:  115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKE 196
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.837e-25
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQ+A+LEE FK H+TL P           LRPRQVEVWFQNRRARTKLKQTEVDCE LKR C+ L ++NRRL KE
Sbjct:   94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKE 175
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.837e-25
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQ+A+LEE FK H+TL P           LRPRQVEVWFQNRRARTKLKQTEVDCE LKR C+ L ++NRRL KE
Sbjct:   94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKE 175
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSJ (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. japonica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.555e-24
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + L+L+K+QS +LE+SF+ HN L+            L+PRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE+LTEEN++L+ E
Sbjct:  115 KKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHE 196
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.555e-24
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + L+L+K+QS +LE+SF+ HN L+            L+PRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE+LTEEN++L+ E
Sbjct:  115 KKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHE 196
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.031e-24
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSK+QS +LEESF+ ++TL P           LRPRQVEVWFQNRRARTKLKQTE++CE+LKRC  +LTEENRRLQ+E
Sbjct:   78 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQRE 159
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.031e-24
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSK+QS +LEESF+ ++TL P           LRPRQVEVWFQNRRARTKLKQTE++CE+LKRC  +LTEENRRLQ+E
Sbjct:   78 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQRE 159
The following BLAST results are available for this feature:
BLAST of CF504347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
HOX7_ORYSJ3.955e-2871.95Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HOX7_ORYSI3.955e-2871.95Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HOX2_ORYSJ6.746e-2870.73Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI6.746e-2870.73Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX28_ORYSJ1.837e-2567.07Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX28_ORYSI1.837e-2567.07Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX18_ORYSJ1.555e-2463.41Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HOX18_ORYSI1.555e-2463.41Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HOX3_ORYSJ2.031e-2465.85Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX3_ORYSI2.031e-2465.85Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-836 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504347 ID=CF504347; Name=CF504347; organism=Citrus sinensis; type=EST; length=362bp
TTTCGAGCGTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAG
CTCGAAATGGAGAGAGCTTGCTCTCGTGGTATCAGCGACGAAGAGGATGG
TGACACCTTCAAGAAAGAAGCCTGAGACTTTCTAAAGATCAGTCAGCCAT
TCTTGAAGAGAGCTTCAAAGAGCACAACACTCTCAACCCAAAGCAAAAGT
TGGCGTTGGCAAAGCAGCTTGGTCTCAGACCTAGACAGGTGGAAGTGTGG
TTCCAGAACAGAAGGGCAAGGACCAAATTGAAGCAAACTGAGGTTGACTG
CGAATTCTTGAAGAGATGCTGTGAGAATCTGACGGAGGAGAACAGGCGGT
TGCAGAAAGAAG
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