CF504347

Overview
NameCF504347
Unique NameCF504347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9537 contig Csv1_Contig9537:476..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.609e-21
Identity = 47/82 (57.32%), Postives = 64/82 (78.05%), Query Frame = 2
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRL+++QS +LE+SF++++TLNP           LRPRQ+EVWFQNRRAR+KLKQTE++CE+LKR   +LTEEN RL +E
Sbjct:  139 KKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHRE 220          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRL+ +Q+ +LE+SF+ HN L+           GL  RQVEVWFQNRRARTKLKQTE DC+ L+R C++L  +N RL+++
Sbjct:  117 KKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRD 198          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  110 QERSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + + LRL+K+QS +LEESF +++TL P           L  RQVEVWFQNRRAR+KLK TE++CE+LKR   +L E+NRRLQ E
Sbjct:   67 RRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIE 150          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.778e-12
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  113 ERSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            E+  RL+ +Q   LE+ F+  N L            GL+PRQ+ +WFQNRRAR+K KQ E D + LKR  E+L +EN  LQ +
Sbjct:   70 EKKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTQ 152          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 2
Query:  107 LQERSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            L E+  RL+ +Q  +LE SF+E N L P          GL+PRQV VWFQNRRAR K KQ E D + LK   + L  ++  L ++
Sbjct:   74 LPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQD 158          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 2
Query:  107 LQERSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            L E+  RL+ +Q  +LE SF+E N L P          GL+PRQV VWFQNRRAR K KQ E D + LK   + L  ++  L ++
Sbjct:   76 LPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQD 160          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: ATB13_ARATH (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 36/81 (44.44%), Postives = 47/81 (58.02%), Query Frame = 2
Query:  113 ERSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQ 355
            E+  RL+ +Q   LE++F+  N L P          GL+PRQ+ +WFQNRRAR K KQ E D + LKR  + L  EN  LQ
Sbjct:   84 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAENDLLQ 164          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.738e-11
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  107 LQERSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENL 331
            L E+  RL+ +Q  +LE+SF+  N L P          GL+PRQV VWFQNRRAR K KQ E D + LK   + L
Sbjct:   65 LPEKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQL 139          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSJ (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.494e-11
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 2
Query:  113 ERSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRL 352
            E+  RL+ +Q  +LE SF+E N L P          G+ PRQV VWFQNRRAR K KQ E D + LK   + L  ++  L
Sbjct:   85 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHAL 164          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.494e-11
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 2
Query:  113 ERSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRL 352
            E+  RL+ +Q  +LE SF+E N L P          G+ PRQV VWFQNRRAR K KQ E D + LK   + L  ++  L
Sbjct:   85 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHAL 164          
The following BLAST results are available for this feature:
BLAST of CF504347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ATB17_ARATH1.609e-2157.32Homeobox-leucine zipper protein ATHB-17 OS=Arabido... [more]
HOX26_ORYSJ1.275e-1851.22Putative homeobox-leucine zipper protein HOX26 OS=... [more]
ATHBX_ARATH1.666e-1854.76Homeobox-leucine zipper protein ATHB-X OS=Arabidop... [more]
ATB23_ARATH6.778e-1243.37Homeobox-leucine zipper protein ATHB-23 OS=Arabido... [more]
HOX16_ORYSJ2.576e-1143.53Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX16_ORYSI2.576e-1143.53Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
ATB13_ARATH2.576e-1144.44Homeobox-leucine zipper protein ATHB-13 OS=Arabido... [more]
HAT5_ARATH5.738e-1146.67Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
HOX5_ORYSJ7.494e-1143.75Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX5_ORYSI7.494e-1143.75Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-836 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504347 ID=CF504347; Name=CF504347; organism=Citrus sinensis; type=EST; length=362bp
TTTCGAGCGTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAG
CTCGAAATGGAGAGAGCTTGCTCTCGTGGTATCAGCGACGAAGAGGATGG
TGACACCTTCAAGAAAGAAGCCTGAGACTTTCTAAAGATCAGTCAGCCAT
TCTTGAAGAGAGCTTCAAAGAGCACAACACTCTCAACCCAAAGCAAAAGT
TGGCGTTGGCAAAGCAGCTTGGTCTCAGACCTAGACAGGTGGAAGTGTGG
TTCCAGAACAGAAGGGCAAGGACCAAATTGAAGCAAACTGAGGTTGACTG
CGAATTCTTGAAGAGATGCTGTGAGAATCTGACGGAGGAGAACAGGCGGT
TGCAGAAAGAAG
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